BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF136b.F
(411 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01310 orf136b#hypothetical protein 815 0.0
At2g07691.1 68415.m00941 hypothetical protein 815 0.0
At4g04490.1 68417.m00651 protein kinase family protein cont... 34 0.87
At4g00955.1 68417.m00129 expressed protein 34 0.87
At3g05680.1 68416.m00634 expressed protein 34 0.87
>AtMg01310 orf136b#hypothetical protein
Length = 411
Score = 815 bits (411), Expect = 0.0
Identities = 411/411 (100%)
Strand = Plus / Plus
Query: 1 atgctgaagagaaaattgaagcctaaacgacttcaattgcctcctcaggatgtcgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgctgaagagaaaattgaagcctaaacgacttcaattgcctcctcaggatgtcgtcttt 60
Query: 61 gaaggggaggcagctatgaatgagtatactttctatcgtaactgggtggaatcctggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaggggaggcagctatgaatgagtatactttctatcgtaactgggtggaatcctggtta 120
Query: 121 cagcacatccgttcatactaccttcttttcattgatggagatccttctctttcaaagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagcacatccgttcatactaccttcttttcattgatggagatccttctctttcaaagttc 180
Query: 181 tttgagattgagatatgtgcccactcttggaagcgttcgactttcgaccaacaggtcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttgagattgagatatgtgcccactcttggaagcgttcgactttcgaccaacaggtcttt 240
Query: 241 aagtttggccttctatgggagtgtgtggatattgctcgctctagaacagtttattggcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtttggccttctatgggagtgtgtggatattgctcgctctagaacagtttattggcaa 300
Query: 301 tgtgctttaggcacaggtcatatacaggaagataaggtatcggaggcaacaagccccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgctttaggcacaggtcatatacaggaagataaggtatcggaggcaacaagccccttt 360
Query: 361 accgatgacagttgtaccaacagctgtttatcaaggatgactggacaataa 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accgatgacagttgtaccaacagctgtttatcaaggatgactggacaataa 411
>At2g07691.1 68415.m00941 hypothetical protein
Length = 411
Score = 815 bits (411), Expect = 0.0
Identities = 411/411 (100%)
Strand = Plus / Plus
Query: 1 atgctgaagagaaaattgaagcctaaacgacttcaattgcctcctcaggatgtcgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgctgaagagaaaattgaagcctaaacgacttcaattgcctcctcaggatgtcgtcttt 60
Query: 61 gaaggggaggcagctatgaatgagtatactttctatcgtaactgggtggaatcctggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaggggaggcagctatgaatgagtatactttctatcgtaactgggtggaatcctggtta 120
Query: 121 cagcacatccgttcatactaccttcttttcattgatggagatccttctctttcaaagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagcacatccgttcatactaccttcttttcattgatggagatccttctctttcaaagttc 180
Query: 181 tttgagattgagatatgtgcccactcttggaagcgttcgactttcgaccaacaggtcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttgagattgagatatgtgcccactcttggaagcgttcgactttcgaccaacaggtcttt 240
Query: 241 aagtttggccttctatgggagtgtgtggatattgctcgctctagaacagtttattggcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtttggccttctatgggagtgtgtggatattgctcgctctagaacagtttattggcaa 300
Query: 301 tgtgctttaggcacaggtcatatacaggaagataaggtatcggaggcaacaagccccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgctttaggcacaggtcatatacaggaagataaggtatcggaggcaacaagccccttt 360
Query: 361 accgatgacagttgtaccaacagctgtttatcaaggatgactggacaataa 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accgatgacagttgtaccaacagctgtttatcaaggatgactggacaataa 411
>At4g04490.1 68417.m00651 protein kinase family protein contains Pfam PF00069:
Protein kinase domain
Length = 1977
Score = 34.2 bits (17), Expect = 0.87
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 162 tccttctctttcaaagttctt 182
||||||| |||||||||||||
Sbjct: 1644 tccttctgtttcaaagttctt 1624
>At4g00955.1 68417.m00129 expressed protein
Length = 1161
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 381 cagctgtttatcaagga 397
|||||||||||||||||
Sbjct: 514 cagctgtttatcaagga 498
>At3g05680.1 68416.m00634 expressed protein
Length = 6424
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 238 tttaagtttggccttct 254
|||||||||||||||||
Sbjct: 831 tttaagtttggccttct 847
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,186
Number of Sequences: 29161
Number of extensions: 11186
Number of successful extensions: 847
Number of sequences better than 10.0: 18
length of query: 411
length of database: 44,058,232
effective HSP length: 17
effective length of query: 394
effective length of database: 43,562,495
effective search space: 17163623030
effective search space used: 17163623030
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)