BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF136a.F
(411 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01300 orf136a#hypothetical protein 815 0.0
At2g07692.1 68415.m00942 hypothetical protein 815 0.0
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin... 36 0.22
At5g56360.1 68418.m07034 calmodulin-binding protein similar... 36 0.22
At3g13600.1 68416.m01712 calmodulin-binding family protein ... 34 0.87
>AtMg01300 orf136a#hypothetical protein
Length = 411
Score = 815 bits (411), Expect = 0.0
Identities = 411/411 (100%)
Strand = Plus / Plus
Query: 1 atgccgagaactgagttaatcctaaatgcagccgtgatcttatatacgatgataccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgccgagaactgagttaatcctaaatgcagccgtgatcttatatacgatgataccacca 60
Query: 61 gacgcgcattccttgggatcagaaggaagagttgtcaacgggaactggcgagacacttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgcgcattccttgggatcagaaggaagagttgtcaacgggaactggcgagacacttct 120
Query: 121 gacgttaaagaaggaagtcttccccgggaggtaactaaacaagttaatggaagtctgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacgttaaagaaggaagtcttccccgggaggtaactaaacaagttaatggaagtctgtct 180
Query: 181 tcccgaactaagcaagttaatgagttcagcaagcacacaaggtttcttgtagacataagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcccgaactaagcaagttaatgagttcagcaagcacacaaggtttcttgtagacataagt 240
Query: 241 ttcagttgttgttccctaataaatagatctctttgggaatcagcacagaaagatgagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcagttgttgttccctaataaatagatctctttgggaatcagcacagaaagatgagctt 300
Query: 301 agtgattccttcgggaaagcacttacaacaaagccagaatgtttagctgtgagagaaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtgattccttcgggaaagcacttacaacaaagccagaatgtttagctgtgagagaaacc 360
Query: 361 cctaggaactttagaagaaatctgtgcttagtgattccttctttgaattga 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctaggaactttagaagaaatctgtgcttagtgattccttctttgaattga 411
>At2g07692.1 68415.m00942 hypothetical protein
Length = 411
Score = 815 bits (411), Expect = 0.0
Identities = 411/411 (100%)
Strand = Plus / Plus
Query: 1 atgccgagaactgagttaatcctaaatgcagccgtgatcttatatacgatgataccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgccgagaactgagttaatcctaaatgcagccgtgatcttatatacgatgataccacca 60
Query: 61 gacgcgcattccttgggatcagaaggaagagttgtcaacgggaactggcgagacacttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgcgcattccttgggatcagaaggaagagttgtcaacgggaactggcgagacacttct 120
Query: 121 gacgttaaagaaggaagtcttccccgggaggtaactaaacaagttaatggaagtctgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacgttaaagaaggaagtcttccccgggaggtaactaaacaagttaatggaagtctgtct 180
Query: 181 tcccgaactaagcaagttaatgagttcagcaagcacacaaggtttcttgtagacataagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcccgaactaagcaagttaatgagttcagcaagcacacaaggtttcttgtagacataagt 240
Query: 241 ttcagttgttgttccctaataaatagatctctttgggaatcagcacagaaagatgagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcagttgttgttccctaataaatagatctctttgggaatcagcacagaaagatgagctt 300
Query: 301 agtgattccttcgggaaagcacttacaacaaagccagaatgtttagctgtgagagaaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtgattccttcgggaaagcacttacaacaaagccagaatgtttagctgtgagagaaacc 360
Query: 361 cctaggaactttagaagaaatctgtgcttagtgattccttctttgaattga 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctaggaactttagaagaaatctgtgcttagtgattccttctttgaattga 411
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1 protein
[Nicotiana tabacum] GI:4160298; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 1289
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 81 agaaggaagagttgtcaa 98
||||||||||||||||||
Sbjct: 997 agaaggaagagttgtcaa 980
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to alpha glucosidase
II beta subunit from GI:2104691 [Mus musculus]
Length = 2275
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 81 agaaggaagagttgtcaa 98
||||||||||||||||||
Sbjct: 1081 agaaggaagagttgtcaa 1098
>At3g13600.1 68416.m01712 calmodulin-binding family protein contains Pfam profile
PF00612: IQ calmodulin-binding motif
Length = 1818
Score = 34.2 bits (17), Expect = 0.87
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 395 ttccttctttgaattga 411
|||||||||||||||||
Sbjct: 1566 ttccttctttgaattga 1550
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,807
Number of Sequences: 29161
Number of extensions: 11807
Number of successful extensions: 873
Number of sequences better than 10.0: 16
length of query: 411
length of database: 44,058,232
effective HSP length: 17
effective length of query: 394
effective length of database: 43,562,495
effective search space: 17163623030
effective search space used: 17163623030
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)