BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF111c.F
(336 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01290 orf111c#hypothetical protein 666 0.0
At5g64090.1 68418.m08049 expressed protein 36 0.18
At2g38060.1 68415.m04672 transporter-related low similarity... 36 0.18
At4g02810.1 68417.m00381 expressed protein 34 0.71
At1g17560.1 68414.m02163 ribosomal protein L14 family prote... 34 0.71
>AtMg01290 orf111c#hypothetical protein
Length = 336
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atgacatttgtaccaacagacttcttgataagaactccagatgatccagcttattttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacatttgtaccaacagacttcttgataagaactccagatgatccagcttattttaaa 60
Query: 61 gataggttagccagccccttctccttcaggggatgcagcaagactacgtccacttcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gataggttagccagccccttctccttcaggggatgcagcaagactacgtccacttcttcc 120
Query: 121 tcaatctactctaagaaaaaggcaagtacagctacttactttagagtcgatccagttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaatctactctaagaaaaaggcaagtacagctacttactttagagtcgatccagttcct 180
Query: 181 cgggggtctcaatcaagtagggtatgtgagcctaaaactaaactaatagtctatcaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgggggtctcaatcaagtagggtatgtgagcctaaaactaaactaatagtctatcaacct 240
Query: 241 gggaactatcaaaaaaaagtaaagagacaagtaaccgatcctctttctttaatggataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggaactatcaaaaaaaagtaaagagacaagtaaccgatcctctttctttaatggataaa 300
Query: 301 gtaaaaaaacgaattgataaaacagaaatactctga 336
||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtaaaaaaacgaattgataaaacagaaatactctga 336
>At5g64090.1 68418.m08049 expressed protein
Length = 1594
Score = 36.2 bits (18), Expect = 0.18
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 99 caagactacgtccacttcttcc 120
|||||||||||||||| |||||
Sbjct: 994 caagactacgtccactgcttcc 973
>At2g38060.1 68415.m04672 transporter-related low similarity to vesicular
glutamate transporter 3 [Homo sapiens] GI:21213895, brain
specific Na+-dependent inorganic phosphate cotransporter
[Rattus norvegicus] GI:507415; contains Pfam profile
PF00083: major facilitator superfamily protein
Length = 1539
Score = 36.2 bits (18), Expect = 0.18
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19 gacttcttgataagaact 36
||||||||||||||||||
Sbjct: 1144 gacttcttgataagaact 1161
>At4g02810.1 68417.m00381 expressed protein
Length = 1040
Score = 34.2 bits (17), Expect = 0.71
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 204 atgtgagcctaaaacta 220
|||||||||||||||||
Sbjct: 839 atgtgagcctaaaacta 855
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein similar to
GB:Z98756 from (Mycobacterium leprae)
Length = 880
Score = 34.2 bits (17), Expect = 0.71
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 249 tcaaaaaaaagtaaaga 265
|||||||||||||||||
Sbjct: 403 tcaaaaaaaagtaaaga 419
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,920
Number of Sequences: 29161
Number of extensions: 10920
Number of successful extensions: 893
Number of sequences better than 10.0: 13
length of query: 336
length of database: 44,058,232
effective HSP length: 17
effective length of query: 319
effective length of database: 43,562,495
effective search space: 13896435905
effective search space used: 13896435905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)