BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF291.F
(876 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01280 orf291#hypothetical protein 1737 0.0
At2g07695.1 68415.m00945 cytochrome c oxidase subunit II, p... 1721 0.0
AtMg00160 cox2#cytochrome c oxidase subunit 2 527 e-149
At4g31860.2 68417.m04527 protein phosphatase 2C, putative /... 34 1.9
At4g31860.1 68417.m04526 protein phosphatase 2C, putative /... 34 1.9
>AtMg01280 orf291#hypothetical protein
Length = 876
Score = 1737 bits (876), Expect = 0.0
Identities = 876/876 (100%)
Strand = Plus / Plus
Query: 1 atgattgttctaaaatggttattcctcacaatttctccttgtgatgcagcggaaccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgattgttctaaaatggttattcctcacaatttctccttgtgatgcagcggaaccatgg 60
Query: 61 caattaggatctcaagacgcagctacacctataatgcaaggaataatagacttacatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caattaggatctcaagacgcagctacacctataatgcaaggaataatagacttacatcac 120
Query: 121 gatatctttttcttcctcattctgattttggttttcgtattatggatcttggttcgcgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatatctttttcttcctcattctgattttggttttcgtattatggatcttggttcgcgct 180
Query: 181 ttatggcatttccactataaaaaaaatgcaatcccgcaaagaattgttcatggaactact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatggcatttccactataaaaaaaatgcaatcccgcaaagaattgttcatggaactact 240
Query: 241 atcgagattcttcggaccatttttccttgtttcatttcgatattcattgttgaaccatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcgagattcttcggaccatttttccttgtttcatttcgatattcattgttgaaccatcc 300
Query: 301 tttgctttggcccttgacgacgcggcggaggctctcttccccaacacagccccgacccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgctttggcccttgacgacgcggcggaggctctcttccccaacacagccccgacccct 360
Query: 361 tccaacacctcctcgtcggaggattcttttgggctgagggttctttcggaaccctggccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccaacacctcctcgtcggaggattcttttgggctgagggttctttcggaaccctggccc 420
Query: 421 attacccgaaatctcgggttggagtcttcgatttgtaatcgaattcgcctgctcgaggcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attacccgaaatctcgggttggagtcttcgatttgtaatcgaattcgcctgctcgaggcg 480
Query: 481 gcgaattccccttttctgcttggaaaagagaaagggcagtattggggggaaattcaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcgaattccccttttctgcttggaaaagagaaagggcagtattggggggaaattcaagaa 540
Query: 541 tgtctttataatgtttccgaacaaagggagtattatagactcttggatttcgagaaccgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtctttataatgtttccgaacaaagggagtattatagactcttggatttcgagaaccgg 600
Query: 601 gatctccaaataagggaacggaagcactcctgtttagaagtctttcggggagtgcttttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatctccaaataagggaacggaagcactcctgtttagaagtctttcggggagtgcttttg 660
Query: 661 aggaatccttatttggaagaaagggccgcctactctcctcaagaggcttttttcgacttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggaatccttatttggaagaaagggccgcctactctcctcaagaggcttttttcgacttc 720
Query: 721 ttgaacgagaggcgggacgcgctggacatttcgaaccccggatctagcccggccgaaatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgaacgagaggcgggacgcgctggacatttcgaaccccggatctagcccggccgaaatg 780
Query: 781 gaccgcctagagatcttatttctaggcgaaatagagcgtgaccttctcagacggggcgac 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaccgcctagagatcttatttctaggcgaaatagagcgtgaccttctcagacggggcgac 840
Query: 841 gaatctctttatattaaacaattacttggggattga 876
||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaatctctttatattaaacaattacttggggattga 876
>At2g07695.1 68415.m00945 cytochrome c oxidase subunit II, putative similar to
cytochrome c oxidase subunit II [Brassica rapa]
GI:2707741; contains Pfam profile PF02790: Cytochrome C
oxidase subunit II, transmembrane domain
Length = 876
Score = 1721 bits (868), Expect = 0.0
Identities = 874/876 (99%)
Strand = Plus / Plus
Query: 1 atgattgttctaaaatggttattcctcacaatttctccttgtgatgcagcggaaccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgattgttctaaaatggttattcctcacaatttctccttgtgatgcagcggaaccatgg 60
Query: 61 caattaggatctcaagacgcagctacacctataatgcaaggaataatagacttacatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caattaggatctcaagacgcagctacacctataatgcaaggaataatagacttacatcac 120
Query: 121 gatatctttttcttcctcattctgattttggttttcgtattatggatcttggttcgcgct 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatatctttttcttcctcattcttattttggttttcgtattatggatcttggttcgcgct 180
Query: 181 ttatggcatttccactataaaaaaaatgcaatcccgcaaagaattgttcatggaactact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatggcatttccactataaaaaaaatgcaatcccgcaaagaattgttcatggaactact 240
Query: 241 atcgagattcttcggaccatttttccttgtttcatttcgatattcattgttgaaccatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcgagattcttcggaccatttttccttgtttcatttcgatattcattgttgaaccatcc 300
Query: 301 tttgctttggcccttgacgacgcggcggaggctctcttccccaacacagccccgacccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgctttggcccttgacgacgcggcggaggctctcttccccaacacagccccgacccct 360
Query: 361 tccaacacctcctcgtcggaggattcttttgggctgagggttctttcggaaccctggccc 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 361 tccaacacctcctcgtcggaggattcttttgggctgagtgttctttcggaaccctggccc 420
Query: 421 attacccgaaatctcgggttggagtcttcgatttgtaatcgaattcgcctgctcgaggcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attacccgaaatctcgggttggagtcttcgatttgtaatcgaattcgcctgctcgaggcg 480
Query: 481 gcgaattccccttttctgcttggaaaagagaaagggcagtattggggggaaattcaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcgaattccccttttctgcttggaaaagagaaagggcagtattggggggaaattcaagaa 540
Query: 541 tgtctttataatgtttccgaacaaagggagtattatagactcttggatttcgagaaccgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtctttataatgtttccgaacaaagggagtattatagactcttggatttcgagaaccgg 600
Query: 601 gatctccaaataagggaacggaagcactcctgtttagaagtctttcggggagtgcttttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatctccaaataagggaacggaagcactcctgtttagaagtctttcggggagtgcttttg 660
Query: 661 aggaatccttatttggaagaaagggccgcctactctcctcaagaggcttttttcgacttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggaatccttatttggaagaaagggccgcctactctcctcaagaggcttttttcgacttc 720
Query: 721 ttgaacgagaggcgggacgcgctggacatttcgaaccccggatctagcccggccgaaatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgaacgagaggcgggacgcgctggacatttcgaaccccggatctagcccggccgaaatg 780
Query: 781 gaccgcctagagatcttatttctaggcgaaatagagcgtgaccttctcagacggggcgac 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaccgcctagagatcttatttctaggcgaaatagagcgtgaccttctcagacggggcgac 840
Query: 841 gaatctctttatattaaacaattacttggggattga 876
||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaatctctttatattaaacaattacttggggattga 876
>AtMg00160 cox2#cytochrome c oxidase subunit 2
Length = 783
Score = 527 bits (266), Expect = e-149
Identities = 296/306 (96%)
Strand = Plus / Minus
Query: 1 atgattgttctaaaatggttattcctcacaatttctccttgtgatgcagcggaaccatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 atgattgttctaaaatggttattcctcacaatttctccttgtgatgcagcggaaccatgg 724
Query: 61 caattaggatctcaagacgcagctacacctataatgcaaggaataatagacttacatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 caattaggatctcaagacgcagctacacctataatgcaaggaataatagacttacatcac 664
Query: 121 gatatctttttcttcctcattctgattttggttttcgtattatggatcttggttcgcgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gatatctttttcttcctcattctgattttggttttcgtattatggatcttggttcgcgct 604
Query: 181 ttatggcatttccactataaaaaaaatgcaatcccgcaaagaattgttcatggaactact 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 603 ttatggcatttccactataaaaaaaatgcaatcccgcaaaggattgttcatggaactact 544
Query: 241 atcgagattcttcggaccatttttccttgtttcatttcgatattcattgttgaaccatcc 300
|||||||||||||||||||| |||||| || |||| ||||| ||||||| | ||||||
Sbjct: 543 atcgagattcttcggaccatctttcctagtatcatctcgatgttcattgctataccatca 484
Query: 301 tttgct 306
||||||
Sbjct: 483 tttgct 478
>At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C, putative
protein phosphatase 2C, Schizosaccharomyces pombe,
PIR2:S54297
Length = 2108
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 tcctcattctgattttg 150
|||||||||||||||||
Sbjct: 658 tcctcattctgattttg 674
>At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C, putative
protein phosphatase 2C, Schizosaccharomyces pombe,
PIR2:S54297
Length = 2023
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 tcctcattctgattttg 150
|||||||||||||||||
Sbjct: 658 tcctcattctgattttg 674
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,723
Number of Sequences: 29161
Number of extensions: 23723
Number of successful extensions: 550
Number of sequences better than 10.0: 43
length of query: 876
length of database: 44,058,232
effective HSP length: 18
effective length of query: 858
effective length of database: 43,533,334
effective search space: 37351600572
effective search space used: 37351600572
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)