BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps7.F
         (447 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg01270  rps7#ribosomal protein S7                              886   0.0  
At2g07696.1  68415.m00947 ribosomal protein S7 family protei...   886   0.0  
At1g49015.1  68414.m05496 eukaryotic translation initiation ...    36   0.24 
At5g66270.1  68418.m08356 zinc finger (CCCH-type) family pro...    34   0.95 
At5g04720.1  68418.m00482 disease resistance protein (CC-NBS...    34   0.95 
>AtMg01270 rps7#ribosomal protein S7
          Length = 447

 Score =  886 bits (447), Expect = 0.0
 Identities = 447/447 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60

                                                                       
Query: 61  aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120

                                                                       
Query: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180

                                                                       
Query: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240

                                                                       
Query: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300

                                                                       
Query: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360

                                                                       
Query: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420

                                      
Query: 421 agtttcgcgcatttcagatggtggtaa 447
           |||||||||||||||||||||||||||
Sbjct: 421 agtttcgcgcatttcagatggtggtaa 447
>At2g07696.1 68415.m00947 ribosomal protein S7 family protein contains Pfam
           profile PF00177: Ribosomal protein S7p/S5e
          Length = 737

 Score =  886 bits (447), Expect = 0.0
 Identities = 447/447 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60

                                                                       
Query: 61  aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120

                                                                       
Query: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180

                                                                       
Query: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240

                                                                       
Query: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300

                                                                       
Query: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360

                                                                       
Query: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420

                                      
Query: 421 agtttcgcgcatttcagatggtggtaa 447
           |||||||||||||||||||||||||||
Sbjct: 421 agtttcgcgcatttcagatggtggtaa 447
>At1g49015.1 68414.m05496 eukaryotic translation initiation factor-related
           contains similarity to eukaryotic translation initiation
           factor 3 subunit 9 SP:Q9C5Z1
          Length = 684

 Score = 36.2 bits (18), Expect = 0.24
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 278 ttgaagcagctttcaaac 295
           ||||||||||||||||||
Sbjct: 634 ttgaagcagctttcaaac 617
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein contains Pfam
            domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
            similar)
          Length = 1841

 Score = 34.2 bits (17), Expect = 0.95
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 38   agaagttggtcaatttt 54
            |||||||||||||||||
Sbjct: 1776 agaagttggtcaatttt 1792
>At5g04720.1 68418.m00482 disease resistance protein (CC-NBS-LRR class),
           putative domain signature CC-NBS-LRR exists, suggestive
           of a disease resistance protein.
          Length = 2691

 Score = 34.2 bits (17), Expect = 0.95
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 378 taggaaaagggagaatcttca 398
           |||||||| ||||||||||||
Sbjct: 321 taggaaaatggagaatcttca 341
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,426
Number of Sequences: 29161
Number of extensions: 11426
Number of successful extensions: 817
Number of sequences better than 10.0: 21
length of query: 447
length of database: 44,058,232
effective HSP length: 17
effective length of query: 430
effective length of database: 43,562,495
effective search space: 18731872850
effective search space used: 18731872850
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)