BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF205.F
(618 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01260 orf205#hypothetical protein 1225 0.0
At1g76040.1 68414.m08830 calcium-dependent protein kinase, ... 38 0.085
At1g76040.2 68414.m08829 calcium-dependent protein kinase, ... 38 0.085
At2g38950.1 68415.m04786 transcription factor jumonji (jmj)... 36 0.34
At1g12140.1 68414.m01406 flavin-containing monooxygenase fa... 36 0.34
>AtMg01260 orf205#hypothetical protein
Length = 618
Score = 1225 bits (618), Expect = 0.0
Identities = 618/618 (100%)
Strand = Plus / Plus
Query: 1 atgcagccagacttgactcttttaggcaaattacgaagcacatgggcgtccgcgacagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcagccagacttgactcttttaggcaaattacgaagcacatgggcgtccgcgacagtg 60
Query: 61 aatgtgattcaccccatctcattatgtttgagctggtttctgggcaccataggctgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgtgattcaccccatctcattatgtttgagctggtttctgggcaccataggctgctca 120
Query: 121 tcgcctctacctctaaggtgtgctgatctgaggatacttcttctaaagaaaaaggaattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgcctctacctctaaggtgtgctgatctgaggatacttcttctaaagaaaaaggaattc 180
Query: 181 tgcctcctcccactgttttaccatctcggcatcttccagcatctcttttatccaatcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcctcctcccactgttttaccatctcggcatcttccagcatctcttttatccaatcatt 240
Query: 241 ccacttttggctttctgtttctatgcccctcgtcttgtttgtccggccgcttcattggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccacttttggctttctgtttctatgcccctcgtcttgtttgtccggccgcttcattggaa 300
Query: 301 ttccagaggaggtatgtcgtctggatcctagctgtttcccgacacattgtcttcttggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttccagaggaggtatgtcgtctggatcctagctgtttcccgacacattgtcttcttggaa 360
Query: 361 aattcttattatattatgcttcttcacccacaccacttgcaccacccacatcctccattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattcttattatattatgcttcttcacccacaccacttgcaccacccacatcctccattt 420
Query: 421 cttatcttcctttttttgatcttgagaaaacttcgacggaatcggtctgtcaaagcccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttatcttcctttttttgatcttgagaaaacttcgacggaatcggtctgtcaaagcccag 480
Query: 481 cgaataatgcaacgttcgtgccaccgccttctttttgccccagtaggtaatgactcagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgaataatgcaacgttcgtgccaccgccttctttttgccccagtaggtaatgactcagaa 540
Query: 541 ctctctgctccttctgcaccatctgaatctgtagttcctcttcgacgtttcaatcgtcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctctctgctccttctgcaccatctgaatctgtagttcctcttcgacgtttcaatcgtcaa 600
Query: 601 tctgtatctactgtctga 618
||||||||||||||||||
Sbjct: 601 tctgtatctactgtctga 618
>At1g76040.1 68414.m08830 calcium-dependent protein kinase, putative / CDPK,
putative similar to calcium-dependent protein kinase
GB:AAC25423 GI:3283996 [Nicotiana tabacum]
Length = 1237
Score = 38.2 bits (19), Expect = 0.085
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 561 atctgaatctgtagttcct 579
|||||||||||||||||||
Sbjct: 1030 atctgaatctgtagttcct 1012
>At1g76040.2 68414.m08829 calcium-dependent protein kinase, putative / CDPK,
putative similar to calcium-dependent protein kinase
GB:AAC25423 GI:3283996 [Nicotiana tabacum]
Length = 1794
Score = 38.2 bits (19), Expect = 0.085
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 561 atctgaatctgtagttcct 579
|||||||||||||||||||
Sbjct: 1587 atctgaatctgtagttcct 1569
>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein contains Pfam domains,
PF02375: jmjN domain, PF02373: jmjC domain and PF02928:
C5HC2 zinc finger
Length = 2482
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 553 tctgcaccatctgaatct 570
||||||||||||||||||
Sbjct: 1030 tctgcaccatctgaatct 1047
>At1g12140.1 68414.m01406 flavin-containing monooxygenase family protein / FMO
family protein similar to flavin-containing
monooxygenase [Cavia porcellus] GI:191259; contains Pfam
profile PF00743: Flavin-binding monooxygenase-like
Length = 1573
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 412 cctccatttcttatcttc 429
||||||||||||||||||
Sbjct: 461 cctccatttcttatcttc 444
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,682
Number of Sequences: 29161
Number of extensions: 18682
Number of successful extensions: 1452
Number of sequences better than 10.0: 35
length of query: 618
length of database: 44,058,232
effective HSP length: 17
effective length of query: 601
effective length of database: 43,562,495
effective search space: 26181059495
effective search space used: 26181059495
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)