BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orF100c.F
         (303 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg01240  orf100c#hypothetical protein                           601   e-171
AtMg01230  orf145b#hypothetical protein                            64   7e-10
At5g40050.1  68418.m04858 F-box family protein contains F-bo...    34   0.64 
At5g25780.1  68418.m03060 eukaryotic translation initiation ...    34   0.64 
At2g27150.1  68415.m03263 aldehyde oxidase 3 (AAO3) identica...    34   0.64 

>AtMg01240 orf100c#hypothetical protein
          Length = 303

 Score =  601 bits (303), Expect = e-171
 Identities = 303/303 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtcctacgctctctacagggaatcgagaccaaaggggttcctccagatcctacgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgagtcctacgctctctacagggaatcgagaccaaaggggttcctccagatcctacgct 60

                                                                       
Query: 61  tttgtatctttagcatcccatcacttcactccacaagggaagattacgattacgtccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttgtatctttagcatcccatcacttcactccacaagggaagattacgattacgtccagc 120

                                                                       
Query: 121 cttactagaaagatagaccccgggaacttccaaggccaagacgtagttgatttctcgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttactagaaagatagaccccgggaacttccaaggccaagacgtagttgatttctcgcct 180

                                                                       
Query: 181 tgggtagtgttgccagacgaagacaaggtcgcctttctcatatcttgtcgagttacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgggtagtgttgccagacgaagacaaggtcgcctttctcatatcttgtcgagttacagca 240

                                                                       
Query: 241 aaaataaggaagagtggattaccgcagcttttcaaaacaaatacttcaagagatatcggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaataaggaagagtggattaccgcagcttttcaaaacaaatacttcaagagatatcggc 300

              
Query: 301 taa 303
           |||
Sbjct: 301 taa 303



>AtMg01230 orf145b#hypothetical protein
          Length = 438

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 272 tcaaaacaaatacttcaagagatatcggctaa 303
           ||||||||||||||||||||||||||||||||
Sbjct: 438 tcaaaacaaatacttcaagagatatcggctaa 407



>At5g40050.1 68418.m04858 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 1248

 Score = 34.2 bits (17), Expect = 0.64
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 213 ctttctcatatcttgtc 229
           |||||||||||||||||
Sbjct: 70  ctttctcatatcttgtc 86



>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3 subunit 9,
           putative / eIF-3 eta, putative / eIF3b, putative nearly
           identical to SP|Q9C5Z1 Eukaryotic translation initiation
           factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b)
           {Arabidopsis thaliana}
          Length = 2405

 Score = 34.2 bits (17), Expect = 0.64
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 164 tagttgatttctcgcct 180
           |||||||||||||||||
Sbjct: 871 tagttgatttctcgcct 887



>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
            GP:3172044:gnl:PID:d1029570:AB010080
          Length = 4344

 Score = 34.2 bits (17), Expect = 0.64
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 190  ttgccagacgaagacaa 206
            |||||||||||||||||
Sbjct: 2461 ttgccagacgaagacaa 2477



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7333
Number of Sequences: 29161
Number of extensions: 7333
Number of successful extensions: 523
Number of sequences better than 10.0: 35
length of query: 303
length of database: 44,058,232
effective HSP length: 16
effective length of query: 287
effective length of database: 43,591,656
effective search space: 12510805272
effective search space used: 12510805272
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)