BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF145b.F
(438 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01230 orf145b#hypothetical protein 868 0.0
AtMg01240 orf100c#hypothetical protein 64 1e-09
At1g52190.1 68414.m05889 proton-dependent oligopeptide tran... 38 0.060
At3g27210.1 68416.m03402 expressed protein 36 0.24
At2g35650.1 68415.m04372 glycosyl transferase family 2 prot... 36 0.24
>AtMg01230 orf145b#hypothetical protein
Length = 438
Score = 868 bits (438), Expect = 0.0
Identities = 438/438 (100%)
Strand = Plus / Plus
Query: 1 atgtggtcttacgaagggaaatgtggtttcttacttttgtcggtatataaagagcaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtggtcttacgaagggaaatgtggtttcttacttttgtcggtatataaagagcaagtt 60
Query: 61 ttggattcctacagtcctcttacgaaggaaaatgggatttcatcaaatcctcgctatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggattcctacagtcctcttacgaaggaaaatgggatttcatcaaatcctcgctatata 120
Query: 121 aagaggaagtttccctttgactctggtttcccttttacgaggaagctaccagctaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagaggaagtttccctttgactctggtttcccttttacgaggaagctaccagctaaagtg 180
Query: 181 gaatcctttctctgtctccctctctttctttcctttctagtagcaaacttgattctgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatcctttctctgtctccctctctttctttcctttctagtagcaaacttgattctgtgg 240
Query: 241 ctttccttccattccgcgagagtagggcaccaaaagctgtcctatcatttattggagtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttccttccattccgcgagagtagggcaccaaaagctgtcctatcatttattggagtgg 300
Query: 301 aaggccttcccatcctcattccgaaacaaagagagtaaggccacttgtgacctatcttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggccttcccatcctcattccgaaacaaagagagtaaggccacttgtgacctatcttct 360
Query: 361 tggtccaacccctactttaagaggaaagcacaaatccccttttcgtttagccgatatctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtccaacccctactttaagaggaaagcacaaatccccttttcgtttagccgatatctc 420
Query: 421 ttgaagtatttgttttga 438
||||||||||||||||||
Sbjct: 421 ttgaagtatttgttttga 438
>AtMg01240 orf100c#hypothetical protein
Length = 303
Score = 63.9 bits (32), Expect = 1e-09
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 407 ttagccgatatctcttgaagtatttgttttga 438
||||||||||||||||||||||||||||||||
Sbjct: 303 ttagccgatatctcttgaagtatttgttttga 272
>At1g52190.1 68414.m05889 proton-dependent oligopeptide transport (POT) family
protein contains Pfam profile: PF00854 POT family
Length = 2270
Score = 38.2 bits (19), Expect = 0.060
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 185 cctttctctgtctccctct 203
|||||||||||||||||||
Sbjct: 72 cctttctctgtctccctct 90
>At3g27210.1 68416.m03402 expressed protein
Length = 1098
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 195 tctccctctctttctttc 212
||||||||||||||||||
Sbjct: 882 tctccctctctttctttc 865
>At2g35650.1 68415.m04372 glycosyl transferase family 2 protein similar to
beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658
from [Bradyrhizobium japonicum], cellulose synthase from
Agrobacterium tumeficiens [gi:710492] and Agrobacterium
radiobacter [gi:710493]; contains Pfam glycosyl
transferase, group 2 family protein domain PF00535;
identical to cDNA for partial mRNA for
glycosyltransferase (cslA07 gene) GI:28551963
Length = 1978
Score = 36.2 bits (18), Expect = 0.24
Identities = 31/34 (91%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 189 tctctgtctccctctctttctttc-ctttctagt 221
||||| |||| ||||||||||||| |||||||||
Sbjct: 65 tctctctctctctctctttctttctctttctagt 32
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,383
Number of Sequences: 29161
Number of extensions: 15383
Number of successful extensions: 1360
Number of sequences better than 10.0: 44
length of query: 438
length of database: 44,058,232
effective HSP length: 17
effective length of query: 421
effective length of database: 43,562,495
effective search space: 18339810395
effective search space used: 18339810395
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)