BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orF113.F
         (342 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg01220  orf113#hypothetical protein                            678   0.0  
AtMg00030  orf107a#hypothetical protein                            40   0.012
At3g17500.1  68416.m02235 F-box family protein contains Pfam...    32   2.8  
At2g30800.1  68415.m03755 DEIH-box RNA/DNA helicase, putativ...    32   2.8  
At2g24310.1  68415.m02906 expressed protein                        32   2.8  

>AtMg01220 orf113#hypothetical protein
          Length = 342

 Score =  678 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaaggtatgccacaatgctatccgagttcacaggtgtcgttccgtctacttttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaaaaggtatgccacaatgctatccgagttcacaggtgtcgttccgtctacttttctt 60

                                                                       
Query: 61  tccaaactttttctaaagtgcgaaataaacctatcaattggtagagtacaagatcgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccaaactttttctaaagtgcgaaataaacctatcaattggtagagtacaagatcgaaaa 120

                                                                       
Query: 121 gaaccctataggcaggctaaaagcgctgtccgtcttcatggcctcaataatactcagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaccctataggcaggctaaaagcgctgtccgtcttcatggcctcaataatactcagtat 180

                                                                       
Query: 181 tgtactggccgaatccgtttcgcagcacggagtatacctcaatctccgttagttccgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtactggccgaatccgtttcgcagcacggagtatacctcaatctccgttagttccgttt 240

                                                                       
Query: 241 cggctttttccccaatttcccactccttctgtgaggcaaaacctcaccacactacacttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cggctttttccccaatttcccactccttctgtgaggcaaaacctcaccacactacacttc 300

                                                     
Query: 301 gacacaagagaagaggaccgggcgcttgtatcttcgggatag 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacacaagagaagaggaccgggcgcttgtatcttcgggatag 342



>AtMg00030 orf107a#hypothetical protein
          Length = 324

 Score = 40.1 bits (20), Expect = 0.012
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 gagtacaagatcgaaaagaa 123
           ||||||||||||||||||||
Sbjct: 187 gagtacaagatcgaaaagaa 168



>At3g17500.1 68416.m02235 F-box family protein contains Pfam profile: PF00646
           F-box domain
          Length = 1317

 Score = 32.2 bits (16), Expect = 2.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 263 ctccttctgtgaggca 278
           ||||||||||||||||
Sbjct: 577 ctccttctgtgaggca 562



>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative similar to DEIH-box
            RNA/DNA helicase [Arabidopsis thaliana] GI:5881579;
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain
          Length = 4266

 Score = 32.2 bits (16), Expect = 2.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 203  cagcacggagtatacc 218
            ||||||||||||||||
Sbjct: 2826 cagcacggagtatacc 2811



>At2g24310.1 68415.m02906 expressed protein
          Length = 1153

 Score = 32.2 bits (16), Expect = 2.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 274 aggcaaaacctcacca 289
           ||||||||||||||||
Sbjct: 855 aggcaaaacctcacca 840



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7050
Number of Sequences: 29161
Number of extensions: 7050
Number of successful extensions: 485
Number of sequences better than 10.0: 6
length of query: 342
length of database: 44,058,232
effective HSP length: 17
effective length of query: 325
effective length of database: 43,562,495
effective search space: 14157810875
effective search space used: 14157810875
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)