BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF101b.F
(306 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01210 orf101b#hypothetical protein 607 e-173
At4g20400.1 68417.m02978 transcription factor jumonji (jmj)... 32 2.5
At3g02530.1 68416.m00241 chaperonin, putative similar to SW... 32 2.5
At1g77390.1 68414.m09012 cyclin, putative similar to mitoti... 32 2.5
At1g20030.2 68414.m02508 pathogenesis-related thaumatin fam... 32 2.5
>AtMg01210 orf101b#hypothetical protein
Length = 306
Score = 607 bits (306), Expect = e-173
Identities = 306/306 (100%)
Strand = Plus / Plus
Query: 1 atgatccatcaaataaatagtattaatatggaaataatcctgactgatgtagcgcgagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatccatcaaataaatagtattaatatggaaataatcctgactgatgtagcgcgagat 60
Query: 61 gcgcttcaagaaaaaatcgtgtcccaactctcaattctgttgagagtatatagggatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgcttcaagaaaaaatcgtgtcccaactctcaattctgttgagagtatatagggatact 120
Query: 121 aatactagtgagagtgtgaccttacctttatccggagtaaatctccaagaagtcgccgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatactagtgagagtgtgaccttacctttatccggagtaaatctccaagaagtcgccgct 180
Query: 181 cgtagtttttttaacaacgagagcattccatggttttttcatctatttagaccttgtcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgtagtttttttaacaacgagagcattccatggttttttcatctatttagaccttgtcaa 240
Query: 241 tcagggcacgaaaaaaaaccactttgcccacaagctctggagttagtgctttcgttcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcagggcacgaaaaaaaaccactttgcccacaagctctggagttagtgctttcgttcagt 300
Query: 301 tcataa 306
||||||
Sbjct: 301 tcataa 306
>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein contains Pfam domains,
PF02375: jmjN domain, PF02373: jmjC domain and PF02928:
C5HC2 zinc finger
Length = 3319
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 tttttaacaacgagag 203
||||||||||||||||
Sbjct: 2437 tttttaacaacgagag 2422
>At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-PROT:P80317-
T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus
musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60
chaperonin family
Length = 1965
Score = 32.2 bits (16), Expect = 2.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 11 aaataaatagtattaatatg 30
|||||||||||||| |||||
Sbjct: 1814 aaataaatagtattcatatg 1795
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin a2-type
[Glycine max] GI:857397; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 1329
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 agcattccatggtttt 217
||||||||||||||||
Sbjct: 1140 agcattccatggtttt 1125
>At1g20030.2 68414.m02508 pathogenesis-related thaumatin family protein
similar to receptor serine/threonine kinase PR5K
[Arabidopsis thaliana] GI:1235680; contains Pfam
profile PF00314: Thaumatin family
Length = 1578
Score = 32.2 bits (16), Expect = 2.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 63 gcttcaagaaaaaatc 78
||||||||||||||||
Sbjct: 20 gcttcaagaaaaaatc 5
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7235
Number of Sequences: 29161
Number of extensions: 7235
Number of successful extensions: 429
Number of sequences better than 10.0: 5
length of query: 306
length of database: 44,058,232
effective HSP length: 16
effective length of query: 290
effective length of database: 43,591,656
effective search space: 12641580240
effective search space used: 12641580240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)