BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF294.F
(885 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01200 orf294#hypothetical protein 1754 0.0
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochon... 1624 0.0
At2g42370.1 68415.m05243 expressed protein 42 0.008
At5g61605.1 68418.m07730 expressed protein 36 0.49
At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein f... 36 0.49
>AtMg01200 orf294#hypothetical protein
Length = 885
Score = 1754 bits (885), Expect = 0.0
Identities = 885/885 (100%)
Strand = Plus / Plus
Query: 1 atgattactcggctgttcgcccaactggtatcgttatcaattgtaacttattggaatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgattactcggctgttcgcccaactggtatcgttatcaattgtaacttattggaatgac 60
Query: 61 gctattgttgcgacaaacttttcctggctcttcataactttctttgttatgactttcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctattgttgcgacaaacttttcctggctcttcataactttctttgttatgactttcacc 120
Query: 121 tttcgtaccttctcgcgctacttcaaaaaaccgatcatttggactttatattttttttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcgtaccttctcgcgctacttcaaaaaaccgatcatttggactttatattttttttta 180
Query: 181 tgtttaatagcctttctccttctttgggcagcccgaatccatataaatatccttttctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtttaatagcctttctccttctttgggcagcccgaatccatataaatatccttttctca 240
Query: 241 tttgcttttggagatgtttatagcttcttcatggcaggggtgttcttgttttatggtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttgcttttggagatgtttatagcttcttcatggcaggggtgttcttgttttatggtttc 300
Query: 301 ggggaattgctgcccatcggatcagattccgatgttggtgaggcaagttgggtcgtaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggggaattgctgcccatcggatcagattccgatgttggtgaggcaagttgggtcgtaaac 360
Query: 361 cctgctacaggggcgagcggtagtggggggaacggctggactgagtctgctgcaaatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctgctacaggggcgagcggtagtggggggaacggctggactgagtctgctgcaaatgat 420
Query: 421 ccggcaagggaagtttccctcgccccctttcctccgcaacttacacatcccgtgcccttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccggcaagggaagtttccctcgccccctttcctccgcaacttacacatcccgtgcccttt 480
Query: 481 cctgccgaacctggctctccggacccggtttctccccctccccccatagcctcgttctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctgccgaacctggctctccggacccggtttctccccctccccccatagcctcgttctac 540
Query: 541 tcccgaatagaaagggctgagtccttacacgccggaaatatagaattggcggaggatcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcccgaatagaaagggctgagtccttacacgccggaaatatagaattggcggaggatcta 600
Query: 601 caacggatccaggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caacggatccaggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgg 660
Query: 661 gaactagccgcccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaactagccgcccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaat 720
Query: 721 cgcgcctgggatatggtacgagatgctcaactcgacatatggaggcaggggcttgatcag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cgcgcctgggatatggtacgagatgctcaactcgacatatggaggcaggggcttgatcag 780
Query: 781 gaattagtaaggcaacaggagaatgagtcccgcctcgaagaaagaaggtttcagtctcat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattagtaaggcaacaggagaatgagtcccgcctcgaagaaagaaggtttcagtctcat 840
Query: 841 tcaaccaactctctttttgaagcagatagttcacgagataattga 885
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcaaccaactctctttttgaagcagatagttcacgagataattga 885
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial, putative very
strong similarity to SP|P23413 ATP synthase alpha chain,
mitochondrial (EC 3.6.3.14) {Brassica campestris};
contains Pfam profiles PF00006: ATP synthase alpha/beta
family nucleotide-binding domain, PF00306: ATP synthase
ab C terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 2433
Score = 1624 bits (819), Expect = 0.0
Identities = 825/827 (99%)
Strand = Plus / Plus
Query: 1 atgattactcggctgttcgcccaactggtatcgttatcaattgtaacttattggaatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgattactcggctgttcgcccaactggtatcgttatcaattgtaacttattggaatgac 60
Query: 61 gctattgttgcgacaaacttttcctggctcttcataactttctttgttatgactttcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctattgttgcgacaaacttttcctggctcttcataactttctttgttatgactttcacc 120
Query: 121 tttcgtaccttctcgcgctacttcaaaaaaccgatcatttggactttatattttttttta 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 tttcgtaccttctcgcgctacttcaaaaaaccgatcatttggactttctattttttttta 180
Query: 181 tgtttaatagcctttctccttctttgggcagcccgaatccatataaatatccttttctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtttaatagcctttctccttctttgggcagcccgaatccatataaatatccttttctca 240
Query: 241 tttgcttttggagatgtttatagcttcttcatggcaggggtgttcttgttttatggtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttgcttttggagatgtttatagcttcttcatggcaggggtgttcttgttttatggtttc 300
Query: 301 ggggaattgctgcccatcggatcagattccgatgttggtgaggcaagttgggtcgtaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggggaattgctgcccatcggatcagattccgatgttggtgaggcaagttgggtcgtaaac 360
Query: 361 cctgctacaggggcgagcggtagtggggggaacggctggactgagtctgctgcaaatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctgctacaggggcgagcggtagtggggggaacggctggactgagtctgctgcaaatgat 420
Query: 421 ccggcaagggaagtttccctcgccccctttcctccgcaacttacacatcccgtgcccttt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 ccggcaagggaagtttccctcgccccctttcctctgcaacttacacatcccgtgcccttt 480
Query: 481 cctgccgaacctggctctccggacccggtttctccccctccccccatagcctcgttctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctgccgaacctggctctccggacccggtttctccccctccccccatagcctcgttctac 540
Query: 541 tcccgaatagaaagggctgagtccttacacgccggaaatatagaattggcggaggatcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcccgaatagaaagggctgagtccttacacgccggaaatatagaattggcggaggatcta 600
Query: 601 caacggatccaggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caacggatccaggaaatggaacgtaacctggagaacgagaggtctccctaccgtgggcgg 660
Query: 661 gaactagccgcccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaactagccgcccgcatcgattgggaggtgcgcgagctggagggaaaagtggcgcgcaat 720
Query: 721 cgcgcctgggatatggtacgagatgctcaactcgacatatggaggcaggggcttgatcag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cgcgcctgggatatggtacgagatgctcaactcgacatatggaggcaggggcttgatcag 780
Query: 781 gaattagtaaggcaacaggagaatgagtcccgcctcgaagaaagaag 827
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattagtaaggcaacaggagaatgagtcccgcctcgaagaaagaag 827
>At2g42370.1 68415.m05243 expressed protein
Length = 2148
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 gctcttcataactttctttgt 107
|||||||||||||||||||||
Sbjct: 1711 gctcttcataactttctttgt 1691
>At5g61605.1 68418.m07730 expressed protein
Length = 495
Score = 36.2 bits (18), Expect = 0.49
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 169 tatttttttttatgttta 186
||||||||||||||||||
Sbjct: 391 tatttttttttatgttta 408
>At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family protein Common
family member At4g25620 [Arabidopsis thaliana]
Length = 2797
Score = 36.2 bits (18), Expect = 0.49
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 228 tatccttttctcatttgctttt 249
||||||||||||||||| ||||
Sbjct: 33 tatccttttctcatttgatttt 54
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,862
Number of Sequences: 29161
Number of extensions: 21862
Number of successful extensions: 475
Number of sequences better than 10.0: 39
length of query: 885
length of database: 44,058,232
effective HSP length: 18
effective length of query: 867
effective length of database: 43,533,334
effective search space: 37743400578
effective search space used: 37743400578
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)