BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= atp1.F
(1524 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01190 atp1#ATPase subunit 1 3021 0.0
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochon... 2976 0.0
AtCg00120 atpA#ATPase alpha subunit 62 1e-08
At2g25200.1 68415.m03014 expressed protein 38 0.21
At5g66630.1 68418.m08398 LIM domain-containing protein cont... 34 3.3
>AtMg01190 atp1#ATPase subunit 1
Length = 1524
Score = 3021 bits (1524), Expect = 0.0
Identities = 1524/1524 (100%)
Strand = Plus / Plus
Query: 1 atggaattatctcctagagctgcggaactaacgaatctattcgaaagtcgaattaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaattatctcctagagctgcggaactaacgaatctattcgaaagtcgaattaggaac 60
Query: 61 ttttacgcgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttacgcgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggatt 120
Query: 121 gcacaagtttatggattgaacgagattcaagctggggaaatggttctttttgccaacggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcacaagtttatggattgaacgagattcaagctggggaaatggttctttttgccaacggt 180
Query: 181 gtgaaaggaatggccttgaatcttgagaatgagaatgtcgggattgttgtctttggtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgaaaggaatggccttgaatcttgagaatgagaatgtcgggattgttgtctttggtggt 240
Query: 241 gataccgctataaaagaaggagatcttgtcaagcgcactggatctattgtggatgttccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gataccgctataaaagaaggagatcttgtcaagcgcactggatctattgtggatgttccc 300
Query: 301 gcgggaaaggctatgctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcgggaaaggctatgctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaa 360
Query: 361 ggggctctaagcgatcacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggggctctaagcgatcacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaa 420
Query: 421 cgtaaatcagtgcacgagcctatgcaaacagggttaaaagcggtagatagcctggttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgtaaatcagtgcacgagcctatgcaaacagggttaaaagcggtagatagcctggttcct 480
Query: 481 ataggccgtggtcaacgagaacttctaatcggtggccgacaaactggaaaaacgactatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ataggccgtggtcaacgagaacttctaatcggtggccgacaaactggaaaaacgactatt 540
Query: 541 gctatcgataccatattaaaccaaaagcaaataaactcaagggccacctctgagagtgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctatcgataccatattaaaccaaaagcaaataaactcaagggccacctctgagagtgag 600
Query: 601 acaatgtattgtgtctatgtagcgattggacagaaacgctcgactgtgggacaattaatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acaatgtattgtgtctatgtagcgattggacagaaacgctcgactgtgggacaattaatt 660
Query: 661 caaactcttgaagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caaactcttgaagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcg 720
Query: 721 gatcctgctcctctgcaatttttggccccatattccgggtgtgccatgggggaatatttc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gatcctgctcctctgcaatttttggccccatattccgggtgtgccatgggggaatatttc 780
Query: 781 cgcgataatggaatgcacgcattaataatctatgatgatcttagtaaacaggcggtggca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cgcgataatggaatgcacgcattaataatctatgatgatcttagtaaacaggcggtggca 840
Query: 841 tatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggtgat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggtgat 900
Query: 901 gttttctatttacattcccgtctcttagaaagagcggctaaacgatcggaccagacaggt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gttttctatttacattcccgtctcttagaaagagcggctaaacgatcggaccagacaggt 960
Query: 961 gcaggtagcttgaccgccttacccgtcattgaaacacaagctggagacgtatcggcctat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gcaggtagcttgaccgccttacccgtcattgaaacacaagctggagacgtatcggcctat 1020
Query: 1021 attcccaccaatgtgatctccattactgatggacaaatctgtttggaaacagagctcttt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 attcccaccaatgtgatctccattactgatggacaaatctgtttggaaacagagctcttt 1080
Query: 1081 tatcgcggaattagacctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgcc 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tatcgcggaattagacctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgcc 1140
Query: 1141 gctcagttgaaagctatgaaacaagtatgcggtagttcaaaactggaattggcacaatat 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gctcagttgaaagctatgaaacaagtatgcggtagttcaaaactggaattggcacaatat 1200
Query: 1201 cgcgaagtggccgcctttgctcaatttggctcagaccttgatgctgcgactcaggcatta 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 cgcgaagtggccgcctttgctcaatttggctcagaccttgatgctgcgactcaggcatta 1260
Query: 1261 ctcaatagaggtgcaaggctgacagaagtaccgaaacaaccacaatatgcaccacttcca 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ctcaatagaggtgcaaggctgacagaagtaccgaaacaaccacaatatgcaccacttcca 1320
Query: 1321 attgaaaaacaaatactagtcatttatgcagctgtcaatggattctgtgatcgaatgcca 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 attgaaaaacaaatactagtcatttatgcagctgtcaatggattctgtgatcgaatgcca 1380
Query: 1381 ctagacagaatctctcaatatgagaaagccattccaaatagtgtcaaacctgaattacta 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ctagacagaatctctcaatatgagaaagccattccaaatagtgtcaaacctgaattacta 1440
Query: 1441 caagcccttaaaggtggattaactaacgaaagaaaaatggaaccagatgctttcttaaaa 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 caagcccttaaaggtggattaactaacgaaagaaaaatggaaccagatgctttcttaaaa 1500
Query: 1501 gaaagagctttagctttaatttag 1524
||||||||||||||||||||||||
Sbjct: 1501 gaaagagctttagctttaatttag 1524
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial, putative very
strong similarity to SP|P23413 ATP synthase alpha chain,
mitochondrial (EC 3.6.3.14) {Brassica campestris};
contains Pfam profiles PF00006: ATP synthase alpha/beta
family nucleotide-binding domain, PF00306: ATP synthase
ab C terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 2433
Score = 2976 bits (1501), Expect = 0.0
Identities = 1507/1509 (99%)
Strand = Plus / Plus
Query: 16 agagctgcggaactaacgaatctattcgaaagtcgaattaggaacttttacgcgaatttt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agagctgcggaactaacgaatctattcgaaagtcgaattaggaacttttacgcgaatttt 885
Query: 76 caagtggatgagatcggtcgagtggtctcagttggagatgggattgcacaagtttatgga 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 caagtggatgagatcggtcgagtggtctcagttggagatgggattgcacaagtttatgga 945
Query: 136 ttgaacgagattcaagctggggaaatggttctttttgccaacggtgtgaaaggaatggcc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ttgaacgagattcaagctggggaaatggttctttttgccaacggtgtgaaaggaatggcc 1005
Query: 196 ttgaatcttgagaatgagaatgtcgggattgttgtctttggtggtgataccgctataaaa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttgaatcttgagaatgagaatgtcgggattgttgtctttggtggtgataccgctataaaa 1065
Query: 256 gaaggagatcttgtcaagcgcactggatctattgtggatgttcccgcgggaaaggctatg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gaaggagatcttgtcaagcgcactggatctattgtggatgttcccgcgggaaaggctatg 1125
Query: 316 ctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaaggggctctaagcgat 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaaggggctctaagcgat 1185
Query: 376 cacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaacgtaaatcagtgcac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 cacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaacgtaaatcagtgcac 1245
Query: 436 gagcctatgcaaacagggttaaaagcggtagatagcctggttcctataggccgtggtcaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gagcctatgcaaacagggttaaaagcggtagatagcctggttcctataggccgtggtcaa 1305
Query: 496 cgagaacttctaatcggtggccgacaaactggaaaaacgactattgctatcgataccata 555
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 cgagaacttctaatcggggaccgacaaactggaaaaacgactattgctatcgataccata 1365
Query: 556 ttaaaccaaaagcaaataaactcaagggccacctctgagagtgagacaatgtattgtgtc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ttaaaccaaaagcaaataaactcaagggccacctctgagagtgagacaatgtattgtgtc 1425
Query: 616 tatgtagcgattggacagaaacgctcgactgtgggacaattaattcaaactcttgaagaa 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 tatgtagcgattggacagaaacgctcgactgtgggacaattaattcaaactcttgaagaa 1485
Query: 676 gcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctg 1545
Query: 736 caatttttggccccatattccgggtgtgccatgggggaatatttccgcgataatggaatg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 caatttttggccccatattccgggtgtgccatgggggaatatttccgcgataatggaatg 1605
Query: 796 cacgcattaataatctatgatgatcttagtaaacaggcggtggcatatcgacaaatgtca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 cacgcattaataatctatgatgatcttagtaaacaggcggtggcatatcgacaaatgtca 1665
Query: 856 ttattgttacgccgaccaccaggccgtgaggctttcccaggtgatgttttctatttacat 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 ttattgttacgccgaccaccaggccgtgaggctttcccaggtgatgttttctatttacat 1725
Query: 916 tcccgtctcttagaaagagcggctaaacgatcggaccagacaggtgcaggtagcttgacc 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 tcccgtctcttagaaagagcggctaaacgatcggaccagacaggtgcaggtagcttgacc 1785
Query: 976 gccttacccgtcattgaaacacaagctggagacgtatcggcctatattcccaccaatgtg 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 gccttacccgtcattgaaacacaagctggagacgtatcggcctatattcccaccaatgtg 1845
Query: 1036 atctccattactgatggacaaatctgtttggaaacagagctcttttatcgcggaattaga 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 atctccattactgatggacaaatctgtttggaaacagagctcttttatcgcggaattaga 1905
Query: 1096 cctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgccgctcagttgaaagct 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 cctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgccgctcagttgaaagct 1965
Query: 1156 atgaaacaagtatgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgcc 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 atgaaacaagtatgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgcc 2025
Query: 1216 tttgctcaatttggctcagaccttgatgctgcgactcaggcattactcaatagaggtgca 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 tttgctcaatttggctcagaccttgatgctgcgactcaggcattactcaatagaggtgca 2085
Query: 1276 aggctgacagaagtaccgaaacaaccacaatatgcaccacttccaattgaaaaacaaata 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 aggctgacagaagtaccgaaacaaccacaatatgcaccacttccaattgaaaaacaaata 2145
Query: 1336 ctagtcatttatgcagctgtcaatggattctgtgatcgaatgccactagacagaatctct 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 ctagtcatttatgcagctgtcaatggattctgtgatcgaatgccactagacagaatctct 2205
Query: 1396 caatatgagaaagccattccaaatagtgtcaaacctgaattactacaagcccttaaaggt 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 caatatgagaaagccattccaaatagtgtcaaacctgaattactacaagcccttaaaggt 2265
Query: 1456 ggattaactaacgaaagaaaaatggaaccagatgctttcttaaaagaaagagctttagct 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 ggattaactaacgaaagaaaaatggaaccagatgctttcttaaaagaaagagctttagct 2325
Query: 1516 ttaatttag 1524
|||||||||
Sbjct: 2326 ttaatttag 2334
>AtCg00120 atpA#ATPase alpha subunit
Length = 1524
Score = 61.9 bits (31), Expect = 1e-08
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 892 ccaggtgatgttttctatttacattcccgtctcttagaaagagcggctaaa 942
||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 862 ccaggagatgttttttatttacattcacgtcttttagaaagagccgctaaa 912
Score = 42.1 bits (21), Expect = 0.014
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1018 tatattcccaccaatgtgatctccattactgatggacaaat 1058
|||||||| || ||||| || |||||||| |||||||||||
Sbjct: 988 tatattcctactaatgtaatttccattacagatggacaaat 1028
>At2g25200.1 68415.m03014 expressed protein
Length = 1065
Score = 38.2 bits (19), Expect = 0.21
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1056 aatctgtttggaaacagag 1074
|||||||||||||||||||
Sbjct: 541 aatctgtttggaaacagag 559
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low similarity
to Pfam profile PF00412: LIM domain
Length = 2411
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 150 agctggggaaatggttc 166
|||||||||||||||||
Sbjct: 312 agctggggaaatggttc 328
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,855
Number of Sequences: 29161
Number of extensions: 36855
Number of successful extensions: 727
Number of sequences better than 10.0: 17
length of query: 1524
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1506
effective length of database: 43,533,334
effective search space: 65561201004
effective search space used: 65561201004
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)