BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= atp1.F
         (1524 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg01190  atp1#ATPase subunit 1                                 3021   0.0  
At2g07698.1  68415.m00949 ATP synthase alpha chain, mitochon...  2976   0.0  
AtCg00120  atpA#ATPase alpha subunit                               62   1e-08
At2g25200.1  68415.m03014 expressed protein                        38   0.21 
At5g66630.1  68418.m08398 LIM domain-containing protein cont...    34   3.3  
>AtMg01190 atp1#ATPase subunit 1
          Length = 1524

 Score = 3021 bits (1524), Expect = 0.0
 Identities = 1524/1524 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggaattatctcctagagctgcggaactaacgaatctattcgaaagtcgaattaggaac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atggaattatctcctagagctgcggaactaacgaatctattcgaaagtcgaattaggaac 60

                                                                        
Query: 61   ttttacgcgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggatt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttttacgcgaattttcaagtggatgagatcggtcgagtggtctcagttggagatgggatt 120

                                                                        
Query: 121  gcacaagtttatggattgaacgagattcaagctggggaaatggttctttttgccaacggt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gcacaagtttatggattgaacgagattcaagctggggaaatggttctttttgccaacggt 180

                                                                        
Query: 181  gtgaaaggaatggccttgaatcttgagaatgagaatgtcgggattgttgtctttggtggt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  gtgaaaggaatggccttgaatcttgagaatgagaatgtcgggattgttgtctttggtggt 240

                                                                        
Query: 241  gataccgctataaaagaaggagatcttgtcaagcgcactggatctattgtggatgttccc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gataccgctataaaagaaggagatcttgtcaagcgcactggatctattgtggatgttccc 300

                                                                        
Query: 301  gcgggaaaggctatgctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gcgggaaaggctatgctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaa 360

                                                                        
Query: 361  ggggctctaagcgatcacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaa 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ggggctctaagcgatcacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaa 420

                                                                        
Query: 421  cgtaaatcagtgcacgagcctatgcaaacagggttaaaagcggtagatagcctggttcct 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  cgtaaatcagtgcacgagcctatgcaaacagggttaaaagcggtagatagcctggttcct 480

                                                                        
Query: 481  ataggccgtggtcaacgagaacttctaatcggtggccgacaaactggaaaaacgactatt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ataggccgtggtcaacgagaacttctaatcggtggccgacaaactggaaaaacgactatt 540

                                                                        
Query: 541  gctatcgataccatattaaaccaaaagcaaataaactcaagggccacctctgagagtgag 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  gctatcgataccatattaaaccaaaagcaaataaactcaagggccacctctgagagtgag 600

                                                                        
Query: 601  acaatgtattgtgtctatgtagcgattggacagaaacgctcgactgtgggacaattaatt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  acaatgtattgtgtctatgtagcgattggacagaaacgctcgactgtgggacaattaatt 660

                                                                        
Query: 661  caaactcttgaagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  caaactcttgaagaagcgaatgctttggaatattccattcttgtagcagccaccgcttcg 720

                                                                        
Query: 721  gatcctgctcctctgcaatttttggccccatattccgggtgtgccatgggggaatatttc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  gatcctgctcctctgcaatttttggccccatattccgggtgtgccatgggggaatatttc 780

                                                                        
Query: 781  cgcgataatggaatgcacgcattaataatctatgatgatcttagtaaacaggcggtggca 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  cgcgataatggaatgcacgcattaataatctatgatgatcttagtaaacaggcggtggca 840

                                                                        
Query: 841  tatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggtgat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tatcgacaaatgtcattattgttacgccgaccaccaggccgtgaggctttcccaggtgat 900

                                                                        
Query: 901  gttttctatttacattcccgtctcttagaaagagcggctaaacgatcggaccagacaggt 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gttttctatttacattcccgtctcttagaaagagcggctaaacgatcggaccagacaggt 960

                                                                        
Query: 961  gcaggtagcttgaccgccttacccgtcattgaaacacaagctggagacgtatcggcctat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gcaggtagcttgaccgccttacccgtcattgaaacacaagctggagacgtatcggcctat 1020

                                                                        
Query: 1021 attcccaccaatgtgatctccattactgatggacaaatctgtttggaaacagagctcttt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 attcccaccaatgtgatctccattactgatggacaaatctgtttggaaacagagctcttt 1080

                                                                        
Query: 1081 tatcgcggaattagacctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgcc 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tatcgcggaattagacctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgcc 1140

                                                                        
Query: 1141 gctcagttgaaagctatgaaacaagtatgcggtagttcaaaactggaattggcacaatat 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gctcagttgaaagctatgaaacaagtatgcggtagttcaaaactggaattggcacaatat 1200

                                                                        
Query: 1201 cgcgaagtggccgcctttgctcaatttggctcagaccttgatgctgcgactcaggcatta 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 cgcgaagtggccgcctttgctcaatttggctcagaccttgatgctgcgactcaggcatta 1260

                                                                        
Query: 1261 ctcaatagaggtgcaaggctgacagaagtaccgaaacaaccacaatatgcaccacttcca 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ctcaatagaggtgcaaggctgacagaagtaccgaaacaaccacaatatgcaccacttcca 1320

                                                                        
Query: 1321 attgaaaaacaaatactagtcatttatgcagctgtcaatggattctgtgatcgaatgcca 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 attgaaaaacaaatactagtcatttatgcagctgtcaatggattctgtgatcgaatgcca 1380

                                                                        
Query: 1381 ctagacagaatctctcaatatgagaaagccattccaaatagtgtcaaacctgaattacta 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ctagacagaatctctcaatatgagaaagccattccaaatagtgtcaaacctgaattacta 1440

                                                                        
Query: 1441 caagcccttaaaggtggattaactaacgaaagaaaaatggaaccagatgctttcttaaaa 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 caagcccttaaaggtggattaactaacgaaagaaaaatggaaccagatgctttcttaaaa 1500

                                    
Query: 1501 gaaagagctttagctttaatttag 1524
            ||||||||||||||||||||||||
Sbjct: 1501 gaaagagctttagctttaatttag 1524
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial, putative very
            strong similarity to SP|P23413 ATP synthase alpha chain,
            mitochondrial (EC 3.6.3.14) {Brassica campestris};
            contains Pfam profiles PF00006: ATP synthase alpha/beta
            family nucleotide-binding domain, PF00306: ATP synthase
            ab C terminal, PF02874: ATP synthase alpha/beta family
            beta-barrel domain
          Length = 2433

 Score = 2976 bits (1501), Expect = 0.0
 Identities = 1507/1509 (99%)
 Strand = Plus / Plus

                                                                        
Query: 16   agagctgcggaactaacgaatctattcgaaagtcgaattaggaacttttacgcgaatttt 75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  agagctgcggaactaacgaatctattcgaaagtcgaattaggaacttttacgcgaatttt 885

                                                                        
Query: 76   caagtggatgagatcggtcgagtggtctcagttggagatgggattgcacaagtttatgga 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  caagtggatgagatcggtcgagtggtctcagttggagatgggattgcacaagtttatgga 945

                                                                        
Query: 136  ttgaacgagattcaagctggggaaatggttctttttgccaacggtgtgaaaggaatggcc 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  ttgaacgagattcaagctggggaaatggttctttttgccaacggtgtgaaaggaatggcc 1005

                                                                        
Query: 196  ttgaatcttgagaatgagaatgtcgggattgttgtctttggtggtgataccgctataaaa 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttgaatcttgagaatgagaatgtcgggattgttgtctttggtggtgataccgctataaaa 1065

                                                                        
Query: 256  gaaggagatcttgtcaagcgcactggatctattgtggatgttcccgcgggaaaggctatg 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gaaggagatcttgtcaagcgcactggatctattgtggatgttcccgcgggaaaggctatg 1125

                                                                        
Query: 316  ctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaaggggctctaagcgat 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ctagggcgtgtggtcgacgcgatgggagtacctattgatggaaaaggggctctaagcgat 1185

                                                                        
Query: 376  cacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaacgtaaatcagtgcac 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 cacgagcaaagacgtgtcgaagtgaaagcccctgggattcttgaacgtaaatcagtgcac 1245

                                                                        
Query: 436  gagcctatgcaaacagggttaaaagcggtagatagcctggttcctataggccgtggtcaa 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gagcctatgcaaacagggttaaaagcggtagatagcctggttcctataggccgtggtcaa 1305

                                                                        
Query: 496  cgagaacttctaatcggtggccgacaaactggaaaaacgactattgctatcgataccata 555
            ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 cgagaacttctaatcggggaccgacaaactggaaaaacgactattgctatcgataccata 1365

                                                                        
Query: 556  ttaaaccaaaagcaaataaactcaagggccacctctgagagtgagacaatgtattgtgtc 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ttaaaccaaaagcaaataaactcaagggccacctctgagagtgagacaatgtattgtgtc 1425

                                                                        
Query: 616  tatgtagcgattggacagaaacgctcgactgtgggacaattaattcaaactcttgaagaa 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 tatgtagcgattggacagaaacgctcgactgtgggacaattaattcaaactcttgaagaa 1485

                                                                        
Query: 676  gcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctg 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcgaatgctttggaatattccattcttgtagcagccaccgcttcggatcctgctcctctg 1545

                                                                        
Query: 736  caatttttggccccatattccgggtgtgccatgggggaatatttccgcgataatggaatg 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 caatttttggccccatattccgggtgtgccatgggggaatatttccgcgataatggaatg 1605

                                                                        
Query: 796  cacgcattaataatctatgatgatcttagtaaacaggcggtggcatatcgacaaatgtca 855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 cacgcattaataatctatgatgatcttagtaaacaggcggtggcatatcgacaaatgtca 1665

                                                                        
Query: 856  ttattgttacgccgaccaccaggccgtgaggctttcccaggtgatgttttctatttacat 915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 ttattgttacgccgaccaccaggccgtgaggctttcccaggtgatgttttctatttacat 1725

                                                                        
Query: 916  tcccgtctcttagaaagagcggctaaacgatcggaccagacaggtgcaggtagcttgacc 975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 tcccgtctcttagaaagagcggctaaacgatcggaccagacaggtgcaggtagcttgacc 1785

                                                                        
Query: 976  gccttacccgtcattgaaacacaagctggagacgtatcggcctatattcccaccaatgtg 1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 gccttacccgtcattgaaacacaagctggagacgtatcggcctatattcccaccaatgtg 1845

                                                                        
Query: 1036 atctccattactgatggacaaatctgtttggaaacagagctcttttatcgcggaattaga 1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 atctccattactgatggacaaatctgtttggaaacagagctcttttatcgcggaattaga 1905

                                                                        
Query: 1096 cctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgccgctcagttgaaagct 1155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 cctgctattaacgtcggcttatctgtcagtcgcgtcgggtctgccgctcagttgaaagct 1965

                                                                        
Query: 1156 atgaaacaagtatgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgcc 1215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 atgaaacaagtatgcggtagttcaaaactggaattggcacaatatcgcgaagtggccgcc 2025

                                                                        
Query: 1216 tttgctcaatttggctcagaccttgatgctgcgactcaggcattactcaatagaggtgca 1275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 tttgctcaatttggctcagaccttgatgctgcgactcaggcattactcaatagaggtgca 2085

                                                                        
Query: 1276 aggctgacagaagtaccgaaacaaccacaatatgcaccacttccaattgaaaaacaaata 1335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 aggctgacagaagtaccgaaacaaccacaatatgcaccacttccaattgaaaaacaaata 2145

                                                                        
Query: 1336 ctagtcatttatgcagctgtcaatggattctgtgatcgaatgccactagacagaatctct 1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 ctagtcatttatgcagctgtcaatggattctgtgatcgaatgccactagacagaatctct 2205

                                                                        
Query: 1396 caatatgagaaagccattccaaatagtgtcaaacctgaattactacaagcccttaaaggt 1455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 caatatgagaaagccattccaaatagtgtcaaacctgaattactacaagcccttaaaggt 2265

                                                                        
Query: 1456 ggattaactaacgaaagaaaaatggaaccagatgctttcttaaaagaaagagctttagct 1515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 ggattaactaacgaaagaaaaatggaaccagatgctttcttaaaagaaagagctttagct 2325

                     
Query: 1516 ttaatttag 1524
            |||||||||
Sbjct: 2326 ttaatttag 2334
>AtCg00120 atpA#ATPase alpha subunit
          Length = 1524

 Score = 61.9 bits (31), Expect = 1e-08
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 892 ccaggtgatgttttctatttacattcccgtctcttagaaagagcggctaaa 942
           ||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 862 ccaggagatgttttttatttacattcacgtcttttagaaagagccgctaaa 912

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 1018 tatattcccaccaatgtgatctccattactgatggacaaat 1058
            |||||||| || ||||| || |||||||| |||||||||||
Sbjct: 988  tatattcctactaatgtaatttccattacagatggacaaat 1028
>At2g25200.1 68415.m03014 expressed protein
          Length = 1065

 Score = 38.2 bits (19), Expect = 0.21
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1056 aatctgtttggaaacagag 1074
            |||||||||||||||||||
Sbjct: 541  aatctgtttggaaacagag 559
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low similarity
           to Pfam profile PF00412: LIM domain
          Length = 2411

 Score = 34.2 bits (17), Expect = 3.3
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 150 agctggggaaatggttc 166
           |||||||||||||||||
Sbjct: 312 agctggggaaatggttc 328
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,855
Number of Sequences: 29161
Number of extensions: 36855
Number of successful extensions: 727
Number of sequences better than 10.0: 17
length of query: 1524
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1506
effective length of database: 43,533,334
effective search space: 65561201004
effective search space used: 65561201004
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)