BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orF111b.F
         (336 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg01180  orf111b#hypothetical protein                           666   0.0  
At5g13650.2  68418.m01585 elongation factor family protein c...    34   0.71 
At5g13650.1  68418.m01584 elongation factor family protein c...    34   0.71 
At2g20800.1  68415.m02446 pyridine nucleotide-disulphide oxi...    34   0.71 
At1g26170.1  68414.m03194 importin beta-2 subunit family pro...    34   0.71 

>AtMg01180 orf111b#hypothetical protein
          Length = 336

 Score =  666 bits (336), Expect = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgactctgtttactcaagagccttctttctcgattaaatgcctgcccactacccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgatgactctgtttactcaagagccttctttctcgattaaatgcctgcccactacccca 60

                                                                       
Query: 61  agcaagccgcataggtctttgttagcagctaggcttctgtttctttccataagcgacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agcaagccgcataggtctttgttagcagctaggcttctgtttctttccataagcgacttc 120

                                                                       
Query: 121 tcctgtagatgcccaaaaataaagctttcgctcaagggatatcgcttcatttactgcgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcctgtagatgcccaaaaataaagctttcgctcaagggatatcgcttcatttactgcgtt 180

                                                                       
Query: 181 agggtggtgccaagcccttcatctctggctaaggctcagtcagataggctcaatatcggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agggtggtgccaagcccttcatctctggctaaggctcagtcagataggctcaatatcggg 240

                                                                       
Query: 241 cttatccggcgaagtctcaaactctgttgtgccagggatatcaggcttgagttgggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttatccggcgaagtctcaaactctgttgtgccagggatatcaggcttgagttgggacag 300

                                               
Query: 301 gtgcttatttcgataccgcttctgttgtttttgtga 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtgcttatttcgataccgcttctgttgtttttgtga 336



>At5g13650.2 68418.m01585 elongation factor family protein contains Pfam
           profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus, PF03144
           elongation factor Tu domain 2
          Length = 2432

 Score = 34.2 bits (17), Expect = 0.71
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 16  actcaagagccttcttt 32
           |||||||||||||||||
Sbjct: 662 actcaagagccttcttt 646



>At5g13650.1 68418.m01584 elongation factor family protein contains Pfam
           profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus, PF03144
           elongation factor Tu domain 2
          Length = 2403

 Score = 34.2 bits (17), Expect = 0.71
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 16  actcaagagccttcttt 32
           |||||||||||||||||
Sbjct: 633 actcaagagccttcttt 617



>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidoreductase family
           protein similar to GI:3718005 alternative
           NADH-dehydrogenase {Yarrowia lipolytica} ; contains Pfam
           profile PF00070: Pyridine nucleotide-disulphide
           oxidoreductase
          Length = 1749

 Score = 34.2 bits (17), Expect = 0.71
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 257 tcaaactctgttgtgcc 273
           |||||||||||||||||
Sbjct: 491 tcaaactctgttgtgcc 475



>At1g26170.1 68414.m03194 importin beta-2 subunit family protein similar to
           Importin9 isoform 1 [Mus musculus] GI:15186756; contains
           Pfam profile PF03810: Importin-beta N-terminal domain
          Length = 2796

 Score = 34.2 bits (17), Expect = 0.71
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 73  aggtctttgttagcagc 89
           |||||||||||||||||
Sbjct: 161 aggtctttgttagcagc 145



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8321
Number of Sequences: 29161
Number of extensions: 8321
Number of successful extensions: 634
Number of sequences better than 10.0: 11
length of query: 336
length of database: 44,058,232
effective HSP length: 17
effective length of query: 319
effective length of database: 43,562,495
effective search space: 13896435905
effective search space used: 13896435905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)