BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rpsl2.F
(378 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg00980 rpsl2#ribosomal protein L2 749 0.0
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondria... 749 0.0
At2g07679.1 68415.m00919 ribosomal protein, putative simila... 127 7e-29
At2g07773.1 68415.m00889 hypothetical protein 125 3e-28
AtMg00910 orf215a#hypothetical protein 103 1e-21
>AtMg00980 rpsl2#ribosomal protein L2
Length = 378
Score = 749 bits (378), Expect = 0.0
Identities = 378/378 (100%)
Strand = Plus / Plus
Query: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
Query: 61 actcgagctttggataaatgtccccagaaaacaggagtatgcccgcgtgtttcaacgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcgagctttggataaatgtccccagaaaacaggagtatgcccgcgtgtttcaacgaga 120
Query: 121 acaccgaaaaaacctaattccgctccacgtaagatagccaaagtacggttgagcaatcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaccgaaaaaacctaattccgctccacgtaagatagccaaagtacggttgagcaatcga 180
Query: 181 catgatatatttgctcacatcccgggcgaaggtcataattcgcaggaacattctacggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catgatatatttgctcacatcccgggcgaaggtcataattcgcaggaacattctacggtg 240
Query: 241 ttaataagaggaggtagagtgaaagattcgccaggtgtaaaatcccattgtattcgagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaataagaggaggtagagtgaaagattcgccaggtgtaaaatcccattgtattcgagga 300
Query: 301 gtaaaggatttgatgggaattccgggtcgaagaagaggcagatcaaaatatggtgcagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtaaaggatttgatgggaattccgggtcgaagaagaggcagatcaaaatatggtgcagaa 360
Query: 361 aaacccaaatcgatatga 378
||||||||||||||||||
Sbjct: 361 aaacccaaatcgatatga 378
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family protein
Length = 378
Score = 749 bits (378), Expect = 0.0
Identities = 378/378 (100%)
Strand = Plus / Plus
Query: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
Query: 61 actcgagctttggataaatgtccccagaaaacaggagtatgcccgcgtgtttcaacgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcgagctttggataaatgtccccagaaaacaggagtatgcccgcgtgtttcaacgaga 120
Query: 121 acaccgaaaaaacctaattccgctccacgtaagatagccaaagtacggttgagcaatcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaccgaaaaaacctaattccgctccacgtaagatagccaaagtacggttgagcaatcga 180
Query: 181 catgatatatttgctcacatcccgggcgaaggtcataattcgcaggaacattctacggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catgatatatttgctcacatcccgggcgaaggtcataattcgcaggaacattctacggtg 240
Query: 241 ttaataagaggaggtagagtgaaagattcgccaggtgtaaaatcccattgtattcgagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaataagaggaggtagagtgaaagattcgccaggtgtaaaatcccattgtattcgagga 300
Query: 301 gtaaaggatttgatgggaattccgggtcgaagaagaggcagatcaaaatatggtgcagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtaaaggatttgatgggaattccgggtcgaagaagaggcagatcaaaatatggtgcagaa 360
Query: 361 aaacccaaatcgatatga 378
||||||||||||||||||
Sbjct: 361 aaacccaaatcgatatga 378
>At2g07679.1 68415.m00919 ribosomal protein, putative similar to ribosomal
protein S12 [Brassica napus] GI:303518; similar to
Swiss-Prot:P92532 mitochondrial ribosomal protein S12
(Arabidopsis thaliana)
Length = 174
Score = 127 bits (64), Expect = 7e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
Query: 61 actcgagctttggata 76
||| || ||||||||
Sbjct: 61 actgaagttttggata 76
>At2g07773.1 68415.m00889 hypothetical protein
Length = 822
Score = 125 bits (63), Expect = 3e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcccacgtttaatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgt 60
Query: 61 act 63
|||
Sbjct: 61 act 63
>AtMg00910 orf215a#hypothetical protein
Length = 648
Score = 103 bits (52), Expect = 1e-21
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 12 taatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgtact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 taatcaattgattcgtcatggtagagaagaaaaacggcgcacggaccgtact 63
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9353
Number of Sequences: 29161
Number of extensions: 9353
Number of successful extensions: 677
Number of sequences better than 10.0: 21
length of query: 378
length of database: 44,058,232
effective HSP length: 17
effective length of query: 361
effective length of database: 43,562,495
effective search space: 15726060695
effective search space used: 15726060695
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)