BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps4.F
         (1089 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg00290  rps4#ribosomal protein S4                             2159   0.0  
At2g07734.1  68415.m00983 ribosomal protein S4 (RPS4) identi...  2159   0.0  
At1g02400.1  68414.m00186 gibberellin 2-oxidase, putative / ...    40   0.038
At3g01320.1  68416.m00045 paired amphipathic helix repeat-co...    38   0.15 
At2g40930.1  68415.m05052 ubiquitin-specific protease 5, put...    36   0.60 
>AtMg00290 rps4#ribosomal protein S4
          Length = 1089

 Score = 2159 bits (1089), Expect = 0.0
 Identities = 1089/1089 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60

                                                                        
Query: 61   acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120

                                                                        
Query: 121  attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180

                                                                        
Query: 181  aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240

                                                                        
Query: 241  gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300

                                                                        
Query: 301  ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360

                                                                        
Query: 361  cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420

                                                                        
Query: 421  attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480

                                                                        
Query: 481  atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540

                                                                        
Query: 541  ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600

                                                                        
Query: 601  ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660

                                                                        
Query: 661  cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720

                                                                        
Query: 721  tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780

                                                                        
Query: 781  ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840

                                                                        
Query: 841  atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900

                                                                        
Query: 901  cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960

                                                                        
Query: 961  gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020

                                                                        
Query: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080

                     
Query: 1081 aacatataa 1089
            |||||||||
Sbjct: 1081 aacatataa 1089
>At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical to small ribosomal
            protein 4 [Arabidopsis thaliana] GI:1460051
          Length = 1388

 Score = 2159 bits (1089), Expect = 0.0
 Identities = 1089/1089 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60

                                                                        
Query: 61   acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120

                                                                        
Query: 121  attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180

                                                                        
Query: 181  aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240

                                                                        
Query: 241  gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300

                                                                        
Query: 301  ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360

                                                                        
Query: 361  cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420

                                                                        
Query: 421  attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480

                                                                        
Query: 481  atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540

                                                                        
Query: 541  ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600

                                                                        
Query: 601  ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660

                                                                        
Query: 661  cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720

                                                                        
Query: 721  tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780

                                                                        
Query: 781  ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840

                                                                        
Query: 841  atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900

                                                                        
Query: 901  cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960

                                                                        
Query: 961  gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020

                                                                        
Query: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080

                     
Query: 1081 aacatataa 1089
            |||||||||
Sbjct: 1081 aacatataa 1089
>At1g02400.1 68414.m00186 gibberellin 2-oxidase, putative / GA2-oxidase,
           putative similar to GA2ox2 [GI:4678368]; similar to
           dioxygenase GI:1666096 from [Marah macrocarpus];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 1338

 Score = 40.1 bits (20), Expect = 0.038
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 789 gaagagaaggaaggataaaa 808
           ||||||||||||||||||||
Sbjct: 47  gaagagaaggaaggataaaa 28
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing protein low
            similarity to transcription co-repressor Sin3 [Xenopus
            laevis] GI:4960210; contains Pfam profile PF02671: Paired
            amphipathic helix repeat
          Length = 4558

 Score = 38.2 bits (19), Expect = 0.15
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 255  agagatgcacagaggaacaaaac 277
            ||||||||||| |||||||||||
Sbjct: 4304 agagatgcacaaaggaacaaaac 4326
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative (UBP5) similar
           to GI:6648604
          Length = 3305

 Score = 36.2 bits (18), Expect = 0.60
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 911 ctatgaagagaagaatcaaaag 932
           ||||||||||||||||| ||||
Sbjct: 185 ctatgaagagaagaatctaaag 164
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,097
Number of Sequences: 29161
Number of extensions: 42097
Number of successful extensions: 976
Number of sequences better than 10.0: 82
length of query: 1089
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1071
effective length of database: 43,533,334
effective search space: 46624200714
effective search space used: 46624200714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)