BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps3.F
(1671 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg00090 rps3#ribosomal protein S3 3313 0.0
AtMg00080 rpl16#ribosomal protein L16 266 6e-70
AtMg00690 orf240a#hypothetical protein 137 3e-31
At5g60140.1 68418.m07539 transcriptional factor B3 family p... 36 0.93
At5g18860.1 68418.m02241 inosine-uridine preferring nucleos... 36 0.93
>AtMg00090 rps3#ribosomal protein S3
Length = 1671
Score = 3313 bits (1671), Expect = 0.0
Identities = 1671/1671 (100%)
Strand = Plus / Minus
Query: 1 atggcacgaaaaggaaatccgatttcggtaagacttggaaaaaatcgtagttcagattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 atggcacgaaaaggaaatccgatttcggtaagacttggaaaaaatcgtagttcagattca 1612
Query: 61 agtcggttcagtgagtattattatggtaaatttgtgtatcaagatgtcaatctgagatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 agtcggttcagtgagtattattatggtaaatttgtgtatcaagatgtcaatctgagatct 1552
Query: 121 tatttcggttcgatacgtccacctacgagactcaccttcggctttcgtctcggtaggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 tatttcggttcgatacgtccacctacgagactcaccttcggctttcgtctcggtaggtgt 1492
Query: 181 attattctacattttcctaaaagaacattcattcatttctttcttccccgtcgaccacga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 attattctacattttcctaaaagaacattcattcatttctttcttccccgtcgaccacga 1432
Query: 241 cgactgaaacgacgtgaaaaaactagacccggaaaggagaagggccggtggtggacgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 cgactgaaacgacgtgaaaaaactagacccggaaaggagaagggccggtggtggacgaca 1372
Query: 301 ttcgggaaagccgggccgatcgagtgtcttcattcaagcgacgatacagaagaagaacga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 ttcgggaaagccgggccgatcgagtgtcttcattcaagcgacgatacagaagaagaacga 1312
Query: 361 aacgaagtgagaggccggggggcaaggaaaagagtcgagtcgatcaggctcgacgaccga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 aacgaagtgagaggccggggggcaaggaaaagagtcgagtcgatcaggctcgacgaccga 1252
Query: 421 aaaaagcaaaacgaaatccggggttggccgaaaaaaaaacaacgctatggataccatgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 aaaaagcaaaacgaaatccggggttggccgaaaaaaaaacaacgctatggataccatgac 1192
Query: 481 cgattaccctcgataaagaagaatctttctaaatcacttcggatcagcggggccttcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 cgattaccctcgataaagaagaatctttctaaatcacttcggatcagcggggccttcaag 1132
Query: 541 catccgaaatacgccggggttgtaaatgacatagcgttcctgatagaaaatgacgactcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 catccgaaatacgccggggttgtaaatgacatagcgttcctgatagaaaatgacgactcc 1072
Query: 601 ttcaaaaaaacgaagttattcaagttatttttccaaaataagtcccgctccgacggcccg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ttcaaaaaaacgaagttattcaagttatttttccaaaataagtcccgctccgacggcccg 1012
Query: 661 acgagttatctacggaccctccctgcagtgcgcccctccttgaattttttggtcatgcaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 acgagttatctacggaccctccctgcagtgcgcccctccttgaattttttggtcatgcaa 952
Query: 721 tacttttttaatacaaagaaccaaattaatttcgaccccgtcgtagttctcaatcatttc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 tacttttttaatacaaagaaccaaattaatttcgaccccgtcgtagttctcaatcatttc 892
Query: 781 gtggcaccgggcgccgctgaaccatctacgatggggagagcgaatgcacagggaagaagc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gtggcaccgggcgccgctgaaccatctacgatggggagagcgaatgcacagggaagaagc 832
Query: 841 ttacagaagagaatacgttctcgtatcgctttttttgtagaaagctcgaccagcgagaaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ttacagaagagaatacgttctcgtatcgctttttttgtagaaagctcgaccagcgagaaa 772
Query: 901 aagtgtttggccgaagccaaaaataggttgacccacttcattcgcttggcgaatgatctt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aagtgtttggccgaagccaaaaataggttgacccacttcattcgcttggcgaatgatctt 712
Query: 961 cgcttcgcgggaacaactaaaaccaccatctcgctctttccattcttcggtgctaccttt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cgcttcgcgggaacaactaaaaccaccatctcgctctttccattcttcggtgctaccttt 652
Query: 1021 ttctttctaagagatggggttggggtgtataataaccttgatgctcgggaacaactcctc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttctttctaagagatggggttggggtgtataataaccttgatgctcgggaacaactcctc 592
Query: 1081 aatcaattaagggtcaaatgttggaacctcgtgggtaaggataagataatggaattgata 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aatcaattaagggtcaaatgttggaacctcgtgggtaaggataagataatggaattgata 532
Query: 1141 gagaaattaaaaaacctaggtgggatagaagaattgataaaggtaatagatatgatgata 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gagaaattaaaaaacctaggtgggatagaagaattgataaaggtaatagatatgatgata 472
Query: 1201 gagatcatactgagaaagagaggaattccgtacaggtacaactcttatttttacgaagtc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagatcatactgagaaagagaggaattccgtacaggtacaactcttatttttacgaagtc 412
Query: 1261 aaaaaaatgcgatctttcttgtctaatagaacaaacactaagaccttaattgagtcagtc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aaaaaaatgcgatctttcttgtctaatagaacaaacactaagaccttaattgagtcagtc 352
Query: 1321 aaaataaaatctgtttatcaaagcgcttctccgattgctcaagacatctcttttcaactg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaataaaatctgtttatcaaagcgcttctccgattgctcaagacatctcttttcaactg 292
Query: 1381 aagaacaaaagaagatcatttcattccatttttgctaaaatagtgaaggagattccaaaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagaacaaaagaagatcatttcattccatttttgctaaaatagtgaaggagattccaaaa 232
Query: 1441 ggggtggagggaatccgtatatgtttttccggtcgattaaaagacgcagcagaaaaagct 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggggtggagggaatccgtatatgtttttccggtcgattaaaagacgcagcagaaaaagct 172
Query: 1501 caaactaaatgctataagcatagaaaaacttctcgtaatgtatttaaccataaaatcgat 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 caaactaaatgctataagcatagaaaaacttctcgtaatgtatttaaccataaaatcgat 112
Query: 1561 tatgctcctgcggaagtatctactcgttacggaatctcaggtgtcaaagtgtggatttca 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tatgctcctgcggaagtatctactcgttacggaatctcaggtgtcaaagtgtggatttca 52
Query: 1621 tatagtcaaaaaaaagggagacgtgctatatccgaaacgtacgaaatatag 1671
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tatagtcaaaaaaaagggagacgtgctatatccgaaacgtacgaaatatag 1
>AtMg00080 rpl16#ribosomal protein L16
Length = 540
Score = 266 bits (134), Expect = 6e-70
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1538 atgtatttaaccataaaatcgattatgctcctgcggaagtatctactcgttacggaatct 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtatttaaccataaaatcgattatgctcctgcggaagtatctactcgttacggaatct 60
Query: 1598 caggtgtcaaagtgtggatttcatatagtcaaaaaaaagggagacgtgctatatccgaaa 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caggtgtcaaagtgtggatttcatatagtcaaaaaaaagggagacgtgctatatccgaaa 120
Query: 1658 cgtacgaaatatag 1671
||||||||||||||
Sbjct: 121 cgtacgaaatatag 134
>AtMg00690 orf240a#hypothetical protein
Length = 723
Score = 137 bits (69), Expect = 3e-31
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 atggcacgaaaaggaaatccgatttcggtaagacttggaaaaaatcgtagttcagattca 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 136 atggcacgaaaaggaaatccgattttggtaagacttggaaaaaatcgtagttcagattca 195
Query: 61 agtcggttcagtg 73
|||||||||||||
Sbjct: 196 agtcggttcagtg 208
>At5g60140.1 68418.m07539 transcriptional factor B3 family protein contains Pfam
profile PF02362: B3 DNA binding domain
Length = 991
Score = 36.2 bits (18), Expect = 0.93
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1137 gatagagaaattaaaaaa 1154
||||||||||||||||||
Sbjct: 319 gatagagaaattaaaaaa 302
>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside hydrolase family
protein contains Pfam profile PF01156: Inosine-uridine
preferring nucleoside hydrolase
Length = 3250
Score = 36.2 bits (18), Expect = 0.93
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1379 tgaagaacaaaagaagat 1396
||||||||||||||||||
Sbjct: 2981 tgaagaacaaaagaagat 2998
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,805
Number of Sequences: 29161
Number of extensions: 48805
Number of successful extensions: 929
Number of sequences better than 10.0: 18
length of query: 1671
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1653
effective length of database: 43,533,334
effective search space: 71960601102
effective search space used: 71960601102
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)