BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycF5.F
(987 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg01040 ycf5#hypothetical protein 1957 0.0
At3g02810.1 68416.m00273 protein kinase family protein cont... 40 0.035
At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-con... 38 0.14
At1g56070.1 68414.m06438 elongation factor 2, putative / EF... 38 0.14
At1g28660.1 68414.m03529 lipase, putative strong similarity... 38 0.14
>AtCg01040 ycf5#hypothetical protein
Length = 987
Score = 1957 bits (987), Expect = 0.0
Identities = 987/987 (100%)
Strand = Plus / Plus
Query: 1 atgattttttcaattttagagcatatattaactcatatatctttttcggtcgtttcaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgattttttcaattttagagcatatattaactcatatatctttttcggtcgtttcaatt 60
Query: 61 gtgctgacaatttattttttaactttattagttaatttagatgaaatcataggatttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgctgacaatttattttttaactttattagttaatttagatgaaatcataggatttttt 120
Query: 121 gattcatcagataaaggaatcataattacgttttttggtataacaggattattattaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattcatcagataaaggaatcataattacgttttttggtataacaggattattattaact 180
Query: 181 cgttggatttattcaggacattttccattaagtaatttatatgaatcattaatttttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgttggatttattcaggacattttccattaagtaatttatatgaatcattaatttttctt 240
Query: 241 tcgtgggctttttcaattattcatatggtttcctattttaataaaaaacaacaaaataag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcgtgggctttttcaattattcatatggtttcctattttaataaaaaacaacaaaataag 300
Query: 301 ttaaacacaataactgcgccaagtgttatttttattcagggttttgctacttcaggtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttaaacacaataactgcgccaagtgttatttttattcagggttttgctacttcaggtctt 360
Query: 361 ttaaacaaaatgcctcagtctgcaatattagtaccagctctccagtcccagtggttaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaaacaaaatgcctcagtctgcaatattagtaccagctctccagtcccagtggttaatg 420
Query: 421 atgcacgtaagtatgatgatattaggctatggcgctctgttatgcggatcattattatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgcacgtaagtatgatgatattaggctatggcgctctgttatgcggatcattattatca 480
Query: 481 atagctcttctagtgattacatttcgcaaagtcggacctactttttggaaaaagaatata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atagctcttctagtgattacatttcgcaaagtcggacctactttttggaaaaagaatata 540
Query: 541 aaaaaaaattttttattaaatgaattattttcttttgatgtactttactacataaatgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaaaaaattttttattaaatgaattattttcttttgatgtactttactacataaatgaa 600
Query: 601 agaaattctattttactacaacaaaacattaattttagtttttctagaaattattatagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agaaattctattttactacaacaaaacattaattttagtttttctagaaattattatagg 660
Query: 661 tatcaactgattcaacaattagatttttggagttttcgtattattagtcttggatttatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tatcaactgattcaacaattagatttttggagttttcgtattattagtcttggatttatc 720
Query: 721 tttttaaccgtcggcattctttcaggagctgtctgggctaatgagacatggggttcatat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tttttaaccgtcggcattctttcaggagctgtctgggctaatgagacatggggttcatat 780
Query: 781 tggaactgggacccaaaagaaacttgggcatttattacttggactatattcgcaatttat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggaactgggacccaaaagaaacttgggcatttattacttggactatattcgcaatttat 840
Query: 841 ttacatattaaaacaaataggaatgttaggggtataaattctgcaattgtggctttgatc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttacatattaaaacaaataggaatgttaggggtataaattctgcaattgtggctttgatc 900
Query: 901 ggttttattttaatttggatatgctattttggcgtcaatcttttaggaataggtttacat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggttttattttaatttggatatgctattttggcgtcaatcttttaggaataggtttacat 960
Query: 961 agttatggttcatttacatcgaattaa 987
|||||||||||||||||||||||||||
Sbjct: 961 agttatggttcatttacatcgaattaa 987
>At3g02810.1 68416.m00273 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 2146
Score = 40.1 bits (20), Expect = 0.035
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 677 aattagatttttggagtttt 696
||||||||||||||||||||
Sbjct: 132 aattagatttttggagtttt 113
>At1g64310.1 68414.m07288 pentatricopeptide (PPR) repeat-containing protein
contains INTERPRO:IPR002885 PPR repeats
Length = 1659
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 351 ttcaggtcttttaaacaaa 369
|||||||||||||||||||
Sbjct: 1263 ttcaggtcttttaaacaaa 1281
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, putative similar
to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 2958
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 530 aaaagaatataaaaaaaaa 548
|||||||||||||||||||
Sbjct: 2867 aaaagaatataaaaaaaaa 2849
>At1g28660.1 68414.m03529 lipase, putative strong similarity to lipase
[Arabidopsis thaliana] GI:1145627
Length = 1336
Score = 38.2 bits (19), Expect = 0.14
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 879 ttctgcaattgtggctttgatcg 901
|||||||||||||| ||||||||
Sbjct: 658 ttctgcaattgtggatttgatcg 680
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,997
Number of Sequences: 29161
Number of extensions: 28997
Number of successful extensions: 622
Number of sequences better than 10.0: 67
length of query: 987
length of database: 44,058,232
effective HSP length: 18
effective length of query: 969
effective length of database: 43,533,334
effective search space: 42183800646
effective search space used: 42183800646
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)