BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps7.F
(447 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01270 rps7#ribosomal protein S7 886 0.0
At2g07696.1 68415.m00947 ribosomal protein S7 family protei... 886 0.0
At1g49015.1 68414.m05496 eukaryotic translation initiation ... 36 0.24
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family pro... 34 0.95
At5g04720.1 68418.m00482 disease resistance protein (CC-NBS... 34 0.95
>AtMg01270 rps7#ribosomal protein S7
Length = 447
Score = 886 bits (447), Expect = 0.0
Identities = 447/447 (100%)
Strand = Plus / Plus
Query: 1 atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60
Query: 61 aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120
Query: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180
Query: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240
Query: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300
Query: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360
Query: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420
Query: 421 agtttcgcgcatttcagatggtggtaa 447
|||||||||||||||||||||||||||
Sbjct: 421 agtttcgcgcatttcagatggtggtaa 447
>At2g07696.1 68415.m00947 ribosomal protein S7 family protein contains Pfam
profile PF00177: Ribosomal protein S7p/S5e
Length = 737
Score = 886 bits (447), Expect = 0.0
Identities = 447/447 (100%)
Strand = Plus / Plus
Query: 1 atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggggggcttggatggtgagcaaaaactattgatcaagaagttggtcaattttcgcatg 60
Query: 61 aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagaaggtaaaagaacgagagttcgtgctattgtttatcaaacttttcatcgcccagct 120
Query: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaactgaacgcgatgtaatcaaacttatggttgacgccgtagagaatataaagcccata 180
Query: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcgaagtagcaaaagtaggagtagcgggtactatttatgatgtccctgggattgtagcc 240
Query: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agggatcgtcaacaaaccttagctattcgttggatccttgaagcagctttcaaacgacgt 300
Query: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataagctataggataagcttagagaaatgttcatttgctgagatactggatgcttaccaa 360
Query: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaggggaagtgcacgtaggaaaagggagaatcttcatggactggcttccaccaatcga 420
Query: 421 agtttcgcgcatttcagatggtggtaa 447
|||||||||||||||||||||||||||
Sbjct: 421 agtttcgcgcatttcagatggtggtaa 447
>At1g49015.1 68414.m05496 eukaryotic translation initiation factor-related
contains similarity to eukaryotic translation initiation
factor 3 subunit 9 SP:Q9C5Z1
Length = 684
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 278 ttgaagcagctttcaaac 295
||||||||||||||||||
Sbjct: 634 ttgaagcagctttcaaac 617
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein contains Pfam
domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar)
Length = 1841
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 38 agaagttggtcaatttt 54
|||||||||||||||||
Sbjct: 1776 agaagttggtcaatttt 1792
>At5g04720.1 68418.m00482 disease resistance protein (CC-NBS-LRR class),
putative domain signature CC-NBS-LRR exists, suggestive
of a disease resistance protein.
Length = 2691
Score = 34.2 bits (17), Expect = 0.95
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 378 taggaaaagggagaatcttca 398
|||||||| ||||||||||||
Sbjct: 321 taggaaaatggagaatcttca 341
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,426
Number of Sequences: 29161
Number of extensions: 11426
Number of successful extensions: 817
Number of sequences better than 10.0: 21
length of query: 447
length of database: 44,058,232
effective HSP length: 17
effective length of query: 430
effective length of database: 43,562,495
effective search space: 18731872850
effective search space used: 18731872850
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)