BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps19.F
         (279 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtCg00820  rps19#ribosomal protein S19                            553   e-157
At5g56550.1  68418.m07057 expressed protein                        34   0.58 
At5g25810.1  68418.m03063 AP2 domain-containing transcriptio...    32   2.3  
At2g34750.1  68415.m04267 RNA polymerase I specific transcri...    32   2.3  
At2g32120.2  68415.m03926 heat shock protein 70 family prote...    32   2.3  

>AtCg00820 rps19#ribosomal protein S19
          Length = 279

 Score =  553 bits (279), Expect = e-157
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgacacgttcactaaaaaaaaacccttttgtagcaaagcatttattaagaaaaatagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgacacgttcactaaaaaaaaacccttttgtagcaaagcatttattaagaaaaatagag 60

                                                                       
Query: 61  aagcttaatacaaaggcggaaaaagaaatcataataacttggtcccgggcatccaccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagcttaatacaaaggcggaaaaagaaatcataataacttggtcccgggcatccaccatt 120

                                                                       
Query: 121 atacccacaatgattggccatacgatcgctattcataatggaagggaacacttacccgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacccacaatgattggccatacgatcgctattcataatggaagggaacacttacccgtt 180

                                                                       
Query: 181 tatataatagatcttatggtaggacataaattaggagaattttcacctactataaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatataatagatcttatggtaggacataaattaggagaattttcacctactataaatttt 240

                                                  
Query: 241 cgaggacatgccaaaaatgataatagatctcgtcgttaa 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgaggacatgccaaaaatgataatagatctcgtcgttaa 279



>At5g56550.1 68418.m07057 expressed protein
          Length = 647

 Score = 34.2 bits (17), Expect = 0.58
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 19  aaaaacccttttgtagc 35
           |||||||||||||||||
Sbjct: 496 aaaaacccttttgtagc 480



>At5g25810.1 68418.m03063 AP2 domain-containing transcription factor TINY (TINY)
            identical to transcription factor TINY (GP:1246403)
            [Arabidopsis thaliana]
          Length = 1017

 Score = 32.2 bits (16), Expect = 2.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 40   catttattaagaaaaa 55
            ||||||||||||||||
Sbjct: 1008 catttattaagaaaaa 993



>At2g34750.1 68415.m04267 RNA polymerase I specific transcription initiation
          factor RRN3 family protein contains Pfam PF05327: RNA
          polymerase I specific transcription initiation factor
          RRN3; similar to RRN3 (GI:7670100) [Homo sapiens]
          similar to RNA polymerase I specific transcription
          initiation factor RRN3 (Swiss-Prot:P36070)
          [Saccharomyces cerevisiae]
          Length = 2175

 Score = 32.2 bits (16), Expect = 2.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                          
Query: 48 aagaaaaatagagaag 63
          ||||||||||||||||
Sbjct: 20 aagaaaaatagagaag 5



>At2g32120.2 68415.m03926 heat shock protein 70 family protein / HSP70 family
           protein similar to SP|P22953 Heat shock cognate 70 kDa
           protein 1 (Hsc70.1) {Arabidopsis thaliana}; contains
           InterPro accession IPR001023: Heat shock protein Hsp70
          Length = 2080

 Score = 32.2 bits (16), Expect = 2.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 13  ctaaaaaaaaacccttttgt 32
           ||||||| ||||||||||||
Sbjct: 128 ctaaaaacaaacccttttgt 147



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7227
Number of Sequences: 29161
Number of extensions: 7227
Number of successful extensions: 535
Number of sequences better than 10.0: 41
length of query: 279
length of database: 44,058,232
effective HSP length: 16
effective length of query: 263
effective length of database: 43,591,656
effective search space: 11464605528
effective search space used: 11464605528
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)