BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps8.F
         (405 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtCg00770  rps8#ribosomal protein S8                              803   0.0  
At1g74890.1  68414.m08681 two-component responsive regulator...    34   0.86 
At5g64710.2  68418.m08135 expressed protein contains Pfam pr...    32   3.4  
At5g64710.1  68418.m08134 expressed protein contains Pfam pr...    32   3.4  
At5g41370.1  68418.m05027 DNA repair protein, putative / TFI...    32   3.4  

>AtCg00770 rps8#ribosomal protein S8
          Length = 405

 Score =  803 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggaaagacaccattgctgatataataacctctatacgaaatgctgacatgaataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggggaaagacaccattgctgatataataacctctatacgaaatgctgacatgaataga 60

                                                                       
Query: 61  aaaggaacggttcggataggatcgactaacatcacggaaagtattgttaaaatcctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaggaacggttcggataggatcgactaacatcacggaaagtattgttaaaatcctttta 120

                                                                       
Query: 121 cgagagggttttatcgaaaacgtaaggaaacatcgcgaaaacaaccaatattttttgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgagagggttttatcgaaaacgtaaggaaacatcgcgaaaacaaccaatattttttgatt 180

                                                                       
Query: 181 ttaaccctaagacatagacgaaataagaaagaatcctacaaaacgattttaaatttaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaaccctaagacatagacgaaataagaaagaatcctacaaaacgattttaaatttaaag 240

                                                                       
Query: 241 agaataagtcgaccgggtctacgaatctattctaactctcaacgaattccacgaatttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaataagtcgaccgggtctacgaatctattctaactctcaacgaattccacgaatttta 300

                                                                       
Query: 301 ggcggaataggaattgtaatcctttcgacttctcaaggtataatgacagaccgagaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggcggaataggaattgtaatcctttcgacttctcaaggtataatgacagaccgagaagct 360

                                                        
Query: 361 cgactaaaaagaatcggcggagaaattttgtgttatatatggtaa 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cgactaaaaagaatcggcggagaaattttgtgttatatatggtaa 405



>At1g74890.1 68414.m08681 two-component responsive regulator / response
           regulator 15 (ARR15) identical to response regulator 15
           GI:11870065 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00072 response regulator receiver domain
          Length = 621

 Score = 34.2 bits (17), Expect = 0.86
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 210 agaatcctacaaaacga 226
           |||||||||||||||||
Sbjct: 487 agaatcctacaaaacga 503



>At5g64710.2 68418.m08135 expressed protein contains Pfam profile PF04396: Protein
            of unknown function, DUF537
          Length = 2294

 Score = 32.2 bits (16), Expect = 3.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 219  caaaacgattttaaat 234
            ||||||||||||||||
Sbjct: 2278 caaaacgattttaaat 2293



>At5g64710.1 68418.m08134 expressed protein contains Pfam profile PF04396: Protein
            of unknown function, DUF537
          Length = 2771

 Score = 32.2 bits (16), Expect = 3.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 219  caaaacgattttaaat 234
            ||||||||||||||||
Sbjct: 2755 caaaacgattttaaat 2770



>At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH basal transcription
            factor complex helicase XPB subunit, putative (XPB1)
            contains Pfam profile PF00271:Helicase conserved
            C-terminal domain; identical to cDNA putative DNA repair
            protein (XPB1) GI:10314019
          Length = 2733

 Score = 32.2 bits (16), Expect = 3.4
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                
Query: 315  tgtaatcctttcgacttctc 334
            ||||||||||||| ||||||
Sbjct: 1553 tgtaatcctttcgtcttctc 1534



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9649
Number of Sequences: 29161
Number of extensions: 9649
Number of successful extensions: 629
Number of sequences better than 10.0: 16
length of query: 405
length of database: 44,058,232
effective HSP length: 17
effective length of query: 388
effective length of database: 43,562,495
effective search space: 16902248060
effective search space used: 16902248060
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)