BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rps18.F
         (306 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtCg00650  rps18#ribosomal protein S18                            607   e-173
At5g66690.1  68418.m08407 UDP-glucoronosyl/UDP-glucosyl tran...    34   0.64 
At5g28750.1  68418.m03531 thylakoid assembly protein, putati...    34   0.64 
At1g66520.1  68414.m07558 formyltransferase, putative simila...    34   0.64 
At5g58880.1  68418.m07377 hypothetical protein                     32   2.5  

>AtCg00650 rps18#ribosomal protein S18
          Length = 306

 Score =  607 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaataaatctaagcgactttttactaaatccaagcgatcttttcgtaggcgtttgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaataaatctaagcgactttttactaaatccaagcgatcttttcgtaggcgtttgccc 60

                                                                       
Query: 61  ccgatccaatcgggggatcgaattgattatagaaacatgagtttaattagtcgatttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccgatccaatcgggggatcgaattgattatagaaacatgagtttaattagtcgatttatt 120

                                                                       
Query: 121 agtgaacaaggaaaaatattatctagacgggtgaatagagtgactttaaaacaacaacga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtgaacaaggaaaaatattatctagacgggtgaatagagtgactttaaaacaacaacga 180

                                                                       
Query: 181 ttaatcactattgctataaaacaagctcgtattttatctttgttaccttttcttaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaatcactattgctataaaacaagctcgtattttatctttgttaccttttcttaataat 240

                                                                       
Query: 241 cagaaacaatttgaaagaagtgagtcgactcctagaactactagtcttagaaccagaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagaaacaatttgaaagaagtgagtcgactcctagaactactagtcttagaaccagaaaa 300

                 
Query: 301 aaatag 306
           ||||||
Sbjct: 301 aaatag 306



>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase family protein
            contains Pfam profile: PF00201 UDP-glucoronosyl and
            UDP-glucosyl transferase
          Length = 1714

 Score = 34.2 bits (17), Expect = 0.64
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 233  ttaataatcagaaacaatttg 253
            |||||||| ||||||||||||
Sbjct: 1692 ttaataatgagaaacaatttg 1712



>At5g28750.1 68418.m03531 thylakoid assembly protein, putative similar to
           thylakoid assembly 4 (tha4) protein [Pisum sativum]
           GI:4929305; contains Pfam profile PF02416: mttA/Hcf106
           family
          Length = 629

 Score = 34.2 bits (17), Expect = 0.64
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 287 ttagaaccagaaaaaaa 303
           |||||||||||||||||
Sbjct: 10  ttagaaccagaaaaaaa 26



>At1g66520.1 68414.m07558 formyltransferase, putative similar to methionyl-tRNA
            formyltransferase [strain N315- Staphylococcus aureus]
            SWISS-PROT:Q99UQ2
          Length = 1321

 Score = 34.2 bits (17), Expect = 0.64
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 240  tcagaaacaatttgaaa 256
            |||||||||||||||||
Sbjct: 1212 tcagaaacaatttgaaa 1196



>At5g58880.1 68418.m07377 hypothetical protein
          Length = 3267

 Score = 32.2 bits (16), Expect = 2.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 165 tttaaaacaacaacga 180
           ||||||||||||||||
Sbjct: 282 tttaaaacaacaacga 297



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7782
Number of Sequences: 29161
Number of extensions: 7782
Number of successful extensions: 606
Number of sequences better than 10.0: 12
length of query: 306
length of database: 44,058,232
effective HSP length: 16
effective length of query: 290
effective length of database: 43,591,656
effective search space: 12641580240
effective search space used: 12641580240
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)