BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycF4.F
(555 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00520 ycf4#hypothetical protein 1100 0.0
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) iden... 38 0.076
At5g57500.1 68418.m07185 expressed protein 34 1.2
At5g33406.1 68418.m03990 hAT dimerisation domain-containing... 34 1.2
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finge... 34 1.2
>AtCg00520 ycf4#hypothetical protein
Length = 555
Score = 1100 bits (555), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus
Query: 1 atgagttggcgatcagaatctatatggatagaatttataacggggtctcgaaaaacaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgagttggcgatcagaatctatatggatagaatttataacggggtctcgaaaaacaagt 60
Query: 61 aatttctgctgggcctttatcctatttttaggttcattaggattcttattggttggaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttctgctgggcctttatcctatttttaggttcattaggattcttattggttggaact 120
Query: 121 tccagttatcttggtagaaatgttatatcgttatttccgtcccagcaaatcatttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccagttatcttggtagaaatgttatatcgttatttccgtcccagcaaatcatttttttt 180
Query: 181 ccacaagggattgtgatgtctttctatgggatcgcaggtctctttattagttgctatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccacaagggattgtgatgtctttctatgggatcgcaggtctctttattagttgctatttg 240
Query: 241 tggtgcactattttgtggaatgtgggtagtggttatgatcttttcgaccgaaaagaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtgcactattttgtggaatgtgggtagtggttatgatcttttcgaccgaaaagaagga 300
Query: 301 atagtgcgtatttttcgttggggatttcctggaaaaagtcgtcgcatctttttacgattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atagtgcgtatttttcgttggggatttcctggaaaaagtcgtcgcatctttttacgattc 360
Query: 361 tttatgaaagatattcagtccatcagaatagaagttaaagagggtgtttctgcccggcgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttatgaaagatattcagtccatcagaatagaagttaaagagggtgtttctgcccggcgt 420
Query: 421 gtcctttatatggaaattcgaggtcaaggggctattcctttaattcgtactgatgagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcctttatatggaaattcgaggtcaaggggctattcctttaattcgtactgatgagaat 480
Query: 481 tttactacacgagaaattgagcaaaaagctgctgaattggcttacttcttgcgtgtacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttactacacgagaaattgagcaaaaagctgctgaattggcttacttcttgcgtgtacca 540
Query: 541 attgaagtattttga 555
|||||||||||||||
Sbjct: 541 attgaagtattttga 555
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 3301
Score = 38.2 bits (19), Expect = 0.076
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 310 atttttcgttggggatttc 328
|||||||||||||||||||
Sbjct: 21 atttttcgttggggatttc 3
>At5g57500.1 68418.m07185 expressed protein
Length = 1172
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 96 attaggattcttattgg 112
|||||||||||||||||
Sbjct: 251 attaggattcttattgg 267
>At5g33406.1 68418.m03990 hAT dimerisation domain-containing protein low
similarity to transposase [Fusarium oxysporum f. sp.
lycopersici] GI:3126916; contains Pfam profile PF05699:
hAT family dimerisation domain
Length = 1458
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 aaatcattttttttcca 183
|||||||||||||||||
Sbjct: 178 aaatcattttttttcca 194
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) family protein
contains a zinc finger, C3HC4 type (RING finger),
signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 1241
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 506 aagctgctgaattggct 522
|||||||||||||||||
Sbjct: 173 aagctgctgaattggct 189
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,117
Number of Sequences: 29161
Number of extensions: 13117
Number of successful extensions: 885
Number of sequences better than 10.0: 20
length of query: 555
length of database: 44,058,232
effective HSP length: 17
effective length of query: 538
effective length of database: 43,562,495
effective search space: 23436622310
effective search space used: 23436622310
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)