BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= accD.F
(1467 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00500 accD#carboxytransferase beta subunit 2908 0.0
At4g32180.1 68417.m04580 eukaryotic pantothenate kinase fam... 38 0.21
At1g27950.1 68414.m03424 lipid transfer protein-related low... 38 0.21
At1g08410.1 68414.m00930 GTP-binding family protein contain... 38 0.21
At5g01970.1 68418.m00116 expressed protein 36 0.81
>AtCg00500 accD#carboxytransferase beta subunit
Length = 1467
Score = 2908 bits (1467), Expect = 0.0
Identities = 1467/1467 (100%)
Strand = Plus / Plus
Query: 1 atggaaaaatcgtggttcaattttatgttttctaagggagaattggaatacagaggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaaaaatcgtggttcaattttatgttttctaagggagaattggaatacagaggtgag 60
Query: 61 ctaagtaaagcaatggatagttttgctcctggtgaaaagactactataagtcaagaccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaagtaaagcaatggatagttttgctcctggtgaaaagactactataagtcaagaccgt 120
Query: 121 tttatatatgatatggataaaaacttttatggttgggatgagcgttctagttattcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttatatatgatatggataaaaacttttatggttgggatgagcgttctagttattcttct 180
Query: 181 agttattccaataatgttgatcttttagttagctccaaggacattcgcaatttcatatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttattccaataatgttgatcttttagttagctccaaggacattcgcaatttcatatcg 240
Query: 241 gatgacaccttttttgttagggatagtaataagaatagttattctatattttttgataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatgacaccttttttgttagggatagtaataagaatagttattctatattttttgataaa 300
Query: 301 aaaaaaaaaatttttgagattgacaatgattttagtgacctagaaaaatttttttatagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaaaaaaatttttgagattgacaatgattttagtgacctagaaaaatttttttatagt 360
Query: 361 tattgtagttctagttatctaaataatagatctaaaggtgacaacgatctgcactatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattgtagttctagttatctaaataatagatctaaaggtgacaacgatctgcactatgat 420
Query: 421 ccttacattaaggatactaaatataattgtactaatcacattaatagttgcattgattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccttacattaaggatactaaatataattgtactaatcacattaatagttgcattgattct 480
Query: 481 tattttcgttcttacatctgtattgataataactttttaatcgatagtaataattttaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattttcgttcttacatctgtattgataataactttttaatcgatagtaataattttaat 540
Query: 541 gaaagttacatttataatttcatttgtagtgaaagcggaaagattcgtgaaagtaaaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaaagttacatttataatttcatttgtagtgaaagcggaaagattcgtgaaagtaaaaat 600
Query: 601 tacaagataagaactaataggaatcgtagtaatttaataagttctaaggatttcgatata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tacaagataagaactaataggaatcgtagtaatttaataagttctaaggatttcgatata 660
Query: 661 actcaaaactacaatcaattgtggattcaatgcgacaattgttatggattaatgtataag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actcaaaactacaatcaattgtggattcaatgcgacaattgttatggattaatgtataag 720
Query: 721 aaagtcaaaatgaatgtttgtgaacaatgtggacattatttgaaaatgagtagttcagaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaagtcaaaatgaatgtttgtgaacaatgtggacattatttgaaaatgagtagttcagaa 780
Query: 781 agaatcgagctttcgattgatccgggtacttggaatcctatggatgaagacatggtctct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agaatcgagctttcgattgatccgggtacttggaatcctatggatgaagacatggtctct 840
Query: 841 gcggatcccattaaatttcattcgaaggaggaaccttataaaaaccgtattgactctgcg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gcggatcccattaaatttcattcgaaggaggaaccttataaaaaccgtattgactctgcg 900
Query: 901 caaaaaactacaggattgactgacgctgttcaaacaggtacaggtcaactaaacggtatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 caaaaaactacaggattgactgacgctgttcaaacaggtacaggtcaactaaacggtatt 960
Query: 961 ccggtagcccttggggttatggattttcggtttatggggggtagtatgggatccgtagta 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ccggtagcccttggggttatggattttcggtttatggggggtagtatgggatccgtagta 1020
Query: 1021 ggcgaaaaaataactcgtttgatcgagtatgctaccaatcaatgtttacctcttatttta 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggcgaaaaaataactcgtttgatcgagtatgctaccaatcaatgtttacctcttatttta 1080
Query: 1081 gtgtgttcttccggaggagcacgaatgcaagaaggaagtttaagtttgatgcaaatggct 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gtgtgttcttccggaggagcacgaatgcaagaaggaagtttaagtttgatgcaaatggct 1140
Query: 1141 aaaatttcttcggttttatgtgattatcaatcaagtaaaaagttattctatatatcaatt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aaaatttcttcggttttatgtgattatcaatcaagtaaaaagttattctatatatcaatt 1200
Query: 1201 cttacatctcctactaccggtggagtgacagctagttttggtatgttgggggatatcatt 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 cttacatctcctactaccggtggagtgacagctagttttggtatgttgggggatatcatt 1260
Query: 1261 attgccgaaccctatgcctatattgcatttgcgggtaaaagagtaattgaacaaacattg 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 attgccgaaccctatgcctatattgcatttgcgggtaaaagagtaattgaacaaacattg 1320
Query: 1321 aaaaaagccgtgcctgaaggttcacaagcggctgaatctttattacgtaagggcttattg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaaaaagccgtgcctgaaggttcacaagcggctgaatctttattacgtaagggcttattg 1380
Query: 1381 gatgcaattgtaccacgtaatcttttaaaaggtgttctgagcgagttatttcagctccat 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gatgcaattgtaccacgtaatcttttaaaaggtgttctgagcgagttatttcagctccat 1440
Query: 1441 gctttttttcctttgaacacaaattaa 1467
|||||||||||||||||||||||||||
Sbjct: 1441 gctttttttcctttgaacacaaattaa 1467
>At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family protein similar
to pantothenate kinase [Emericella nidulans] GI:4191500;
contains Pfam profiles PF03630: Fumble, PF01937: Protein
of unknown function
Length = 2896
Score = 38.2 bits (19), Expect = 0.21
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 287 tattttttgataaaaaaaaaaaa 309
|||||||| ||||||||||||||
Sbjct: 43 tattttttaataaaaaaaaaaaa 65
>At1g27950.1 68414.m03424 lipid transfer protein-related low similarity to lipid
transfer protein Picea abies GI:2627141; contains Pfam
profile: PF00234: Protease inhibitor/seed storage/LTP
family
Length = 786
Score = 38.2 bits (19), Expect = 0.21
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1297 aaaagagtaattgaacaaa 1315
|||||||||||||||||||
Sbjct: 1 aaaagagtaattgaacaaa 19
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam domain,
PF01926: GTPase of unknown function
Length = 2161
Score = 38.2 bits (19), Expect = 0.21
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 288 attttttgataaaaaaaaaaaaa 310
||||||||| |||||||||||||
Sbjct: 1963 attttttgaaaaaaaaaaaaaaa 1941
>At5g01970.1 68418.m00116 expressed protein
Length = 1646
Score = 36.2 bits (18), Expect = 0.81
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 293 ttgataaaaaaaaaaaaa 310
||||||||||||||||||
Sbjct: 284 ttgataaaaaaaaaaaaa 267
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,699
Number of Sequences: 29161
Number of extensions: 44699
Number of successful extensions: 1120
Number of sequences better than 10.0: 24
length of query: 1467
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1449
effective length of database: 43,533,334
effective search space: 63079800966
effective search space used: 63079800966
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)