BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps4.F
(1089 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg00290 rps4#ribosomal protein S4 2159 0.0
At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identi... 2159 0.0
At1g02400.1 68414.m00186 gibberellin 2-oxidase, putative / ... 40 0.038
At3g01320.1 68416.m00045 paired amphipathic helix repeat-co... 38 0.15
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, put... 36 0.60
>AtMg00290 rps4#ribosomal protein S4
Length = 1089
Score = 2159 bits (1089), Expect = 0.0
Identities = 1089/1089 (100%)
Strand = Plus / Plus
Query: 1 atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60
Query: 61 acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120
Query: 121 attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180
Query: 181 aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240
Query: 241 gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300
Query: 301 ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360
Query: 361 cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420
Query: 421 attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480
Query: 481 atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540
Query: 541 ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600
Query: 601 ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660
Query: 661 cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720
Query: 721 tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780
Query: 781 ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840
Query: 841 atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900
Query: 901 cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960
Query: 961 gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020
Query: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080
Query: 1081 aacatataa 1089
|||||||||
Sbjct: 1081 aacatataa 1089
>At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical to small ribosomal
protein 4 [Arabidopsis thaliana] GI:1460051
Length = 1388
Score = 2159 bits (1089), Expect = 0.0
Identities = 1089/1089 (100%)
Strand = Plus / Plus
Query: 1 atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtggctgcttaaaaaactgattcaacgagatatagatttgtccccattaagatttcaa 60
Query: 61 acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttgtcgtctactttcaggaaatgttcggaacagagaactgacaataatacaacgccgc 120
Query: 121 attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attctccgaagattgaggaacaggaagagatctattaagaagagaaagatttatccgaaa 180
Query: 181 aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatatcttaccagttatatacaattacaaactacacgaaagttgcccctttttcatggg 240
Query: 241 gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatttacccatcacagagatgcacagaggaacaaaacgaacttcatatatcccttttcca 300
Query: 301 ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcaatccagaaacaagatttgacgttattccgcttcgtctccattttcttgaaactatt 360
Query: 361 cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctcaagcaaggcagccgataagtcatcgaagggtttgtgtgaataaaggaatggtaagc 420
Query: 421 attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attactcattttaaactttcccacggtgatataatatcttttcaagaaaataacgcgata 480
Query: 481 atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atacgcggtgaagaaataaggagatctttctataaagaaatttcagttgaaaaaatcata 540
Query: 541 ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggcaaattactgcatcaaccgctaagaatgtggagaagaagcaaaactgaatggttccac 600
Query: 601 ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctactcaaaactaagaggggatgccgcctactactaaaatcccggtttttgcaacagttg 660
Query: 661 cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgttcttctatgcaagaagaagacttagaaagaacaaagaagtttggatccgaaaaagta 720
Query: 721 tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgcttaggaagttccttcgctgagcacaagagaatgaagaggaatttgttaaaatcccta 780
Query: 781 ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttcttatcgaagagaaggaaggataaaaacctaaatcttcctactcgaacaatcagtcct 840
Query: 841 atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atagtttacaactcttctttatctttatatagtaattcgacctattgcttcgcatccccc 900
Query: 901 cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cataagttgactatgaagagaagaatcaaaaggatcgaactacctactcattattcggag 960
Query: 961 gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gttaatcatagaacaccaaaagctgtggtatcttatggacctaacataggtcatatccct 1020
Query: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cacgacataagattaaaagatccaaaccttcctcttcggagcagaaacggacgtggccaa 1080
Query: 1081 aacatataa 1089
|||||||||
Sbjct: 1081 aacatataa 1089
>At1g02400.1 68414.m00186 gibberellin 2-oxidase, putative / GA2-oxidase,
putative similar to GA2ox2 [GI:4678368]; similar to
dioxygenase GI:1666096 from [Marah macrocarpus];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 1338
Score = 40.1 bits (20), Expect = 0.038
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 789 gaagagaaggaaggataaaa 808
||||||||||||||||||||
Sbjct: 47 gaagagaaggaaggataaaa 28
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing protein low
similarity to transcription co-repressor Sin3 [Xenopus
laevis] GI:4960210; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 4558
Score = 38.2 bits (19), Expect = 0.15
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 255 agagatgcacagaggaacaaaac 277
||||||||||| |||||||||||
Sbjct: 4304 agagatgcacaaaggaacaaaac 4326
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative (UBP5) similar
to GI:6648604
Length = 3305
Score = 36.2 bits (18), Expect = 0.60
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 911 ctatgaagagaagaatcaaaag 932
||||||||||||||||| ||||
Sbjct: 185 ctatgaagagaagaatctaaag 164
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,097
Number of Sequences: 29161
Number of extensions: 42097
Number of successful extensions: 976
Number of sequences better than 10.0: 82
length of query: 1089
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1071
effective length of database: 43,533,334
effective search space: 46624200714
effective search space used: 46624200714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)