BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ycF3.F
         (381 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtCg00360  ycf3#hypothetical protein                              755   0.0  
At4g19170.1  68417.m02829 9-cis-epoxycarotenoid dioxygenase,...    42   0.003
At5g13740.1  68418.m01599 sugar transporter family protein c...    36   0.20 
At1g54330.1  68414.m06194 no apical meristem (NAM) family pr...    34   0.81 
At5g48600.1  68418.m06011 structural maintenance of chromoso...    32   3.2  

>AtCg00360 ycf3#hypothetical protein
          Length = 381

 Score =  755 bits (381), Expect = 0.0
 Identities = 381/381 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcggctcaatctgaaggaaattatgcggaagcattacagaattattatgaagctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcggctcaatctgaaggaaattatgcggaagcattacagaattattatgaagctatg 322

                                                                       
Query: 61  cgactagaaattgacccctatgatcgaagttatatactctataatataggccttatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgactagaaattgacccctatgatcgaagttatatactctataatataggccttatccat 262

                                                                       
Query: 121 acaagtaatggggaacataccaaagctttagaatattattttcgggcattagaacgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagtaatggggaacataccaaagctttagaatattattttcgggcattagaacgaaac 202

                                                                       
Query: 181 ccctttttaccacaagcttttaataatatggctgtgatctgtcattaccgtggagaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctttttaccacaagcttttaataatatggctgtgatctgtcattaccgtggagaacag 142

                                                                       
Query: 241 gccattcaacaaggagattctgaaatggcggaggcttggttcgctcaagccgctgagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gccattcaacaaggagattctgaaatggcggaggcttggttcgctcaagccgctgagtat 82

                                                                       
Query: 301 tggaaacaggctataacgcttactcctggtaattatattgaagcacagaattggttgacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  tggaaacaggctataacgcttactcctggtaattatattgaagcacagaattggttgacg 22

                                
Query: 361 atcacgaggcgcttcgaataa 381
           |||||||||||||||||||||
Sbjct: 21  atcacgaggcgcttcgaataa 1



>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, putative / neoxanthin
            cleavage enzyme, putative / carotenoid cleavage
            dioxygenase, putative similar to 9-cis-epoxycarotenoid
            dioxygenase [Phaseolus vulgaris][GI:6715257]; neoxanthin
            cleavage enzyme, Lycopersicon esculentum, PATX:E325797
          Length = 2072

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 134  aacataccaaagctttagaatattatttt 162
            |||||||||||||||  ||||||||||||
Sbjct: 1980 aacataccaaagcttatgaatattatttt 2008



>At5g13740.1 68418.m01599 sugar transporter family protein contains Pfam profile
           PF00083: major facilitator superfamily protein
          Length = 1912

 Score = 36.2 bits (18), Expect = 0.20
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 257 attctgaaatggcggagg 274
           ||||||||||||||||||
Sbjct: 259 attctgaaatggcggagg 276



>At1g54330.1 68414.m06194 no apical meristem (NAM) family protein contains Pfam
           PF02365: No apical meristem (NAM) domain; similar to NAM
           protein GI:1279639 from [Petunia hybrida]
          Length = 897

 Score = 34.2 bits (17), Expect = 0.81
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 327 tggtaattatattgaag 343
           |||||||||||||||||
Sbjct: 561 tggtaattatattgaag 577



>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC) family
            protein similar to SP|P50532 Chromosome assembly protein
            XCAP-C {Xenopus laevis}; contains Pfam profiles PF02483:
            SMC family C-terminal domain, PF02463: RecF/RecN/SMC N
            terminal domain
          Length = 3796

 Score = 32.2 bits (16), Expect = 3.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 134  aacataccaaagctttagaa 153
            ||||||||||||||| ||||
Sbjct: 1190 aacataccaaagcttcagaa 1209



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7797
Number of Sequences: 29161
Number of extensions: 7797
Number of successful extensions: 561
Number of sequences better than 10.0: 12
length of query: 381
length of database: 44,058,232
effective HSP length: 17
effective length of query: 364
effective length of database: 43,562,495
effective search space: 15856748180
effective search space used: 15856748180
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)