BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ycF9.F
(189 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00300 ycf9#hypothetical protein 375 e-104
At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast ... 34 0.38
At5g19900.1 68418.m02368 PRLI-interacting factor, putative ... 32 1.5
At5g11430.1 68418.m01335 transcription elongation factor-re... 32 1.5
At4g38110.1 68417.m05382 expressed protein 32 1.5
>AtCg00300 ycf9#hypothetical protein
Length = 189
Score = 375 bits (189), Expect = e-104
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 atgactattgctttccaattggcagtttttgcattaattattacttcatcaatcttactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactattgctttccaattggcagtttttgcattaattattacttcatcaatcttactg 60
Query: 61 attagtgtacccgttgtatttgcgtctcctgatggttggtcgagtaacaaaaatgttgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attagtgtacccgttgtatttgcgtctcctgatggttggtcgagtaacaaaaatgttgta 120
Query: 121 ttttctggtacatctttatggattggattagtcttcttggtgggtatccttaattctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttctggtacatctttatggattggattagtcttcttggtgggtatccttaattctctt 180
Query: 181 atctcttga 189
|||||||||
Sbjct: 181 atctcttga 189
>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4) nearly
identical to SP|Q9SEU6 Thioredoxin M-type 4, chloroplast
precursor (TRX-M4) {Arabidopsis thaliana}
Length = 882
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 96 ttggtcgagtaacaaaa 112
|||||||||||||||||
Sbjct: 631 ttggtcgagtaacaaaa 647
>At5g19900.1 68418.m02368 PRLI-interacting factor, putative strong similarity to
PRLI-interacting factor A [Arabidopsis thaliana]
GI:11139262
Length = 1886
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 ttttctggtacatctt 136
||||||||||||||||
Sbjct: 1788 ttttctggtacatctt 1803
>At5g11430.1 68418.m01335 transcription elongation factor-related contains weak
similarity to transcription elongation factors
Length = 2764
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 41 ttacttcatcaatctt 56
||||||||||||||||
Sbjct: 1531 ttacttcatcaatctt 1516
>At4g38110.1 68417.m05382 expressed protein
Length = 1569
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 38 ttattacttcatcaat 53
||||||||||||||||
Sbjct: 461 ttattacttcatcaat 476
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5631
Number of Sequences: 29161
Number of extensions: 5631
Number of successful extensions: 452
Number of sequences better than 10.0: 27
length of query: 189
length of database: 44,058,232
effective HSP length: 16
effective length of query: 173
effective length of database: 43,591,656
effective search space: 7541356488
effective search space used: 7541356488
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)