BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps2.F
(711 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00160 rps2#ribosomal protein S2 1409 0.0
At4g17710.1 68417.m02645 homeobox-leucine zipper family pro... 36 0.39
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-... 36 0.39
At5g60210.1 68418.m07547 cytoplasmic linker protein-related... 34 1.5
At5g02350.1 68418.m00158 DC1 domain-containing protein cont... 34 1.5
>AtCg00160 rps2#ribosomal protein S2
Length = 711
Score = 1409 bits (711), Expect = 0.0
Identities = 711/711 (100%)
Strand = Plus / Plus
Query: 1 atgacaaaaagatattggaacatcgatttggaagagatgatgagagcaggagttcatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacaaaaagatattggaacatcgatttggaagagatgatgagagcaggagttcatttt 60
Query: 61 ggacatggtacgaggaaatggaatcctagaatggcaccttatatttctgcaaagcgtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggacatggtacgaggaaatggaatcctagaatggcaccttatatttctgcaaagcgtaaa 120
Query: 121 ggtattcatattataaatctgactagaactgctcgttttttatcagaagcttgtgattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtattcatattataaatctgactagaactgctcgttttttatcagaagcttgtgattta 180
Query: 181 gtttttgatgcggcaagtaggggaaaacaattcttaattgttgggacaaaaaataaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttttgatgcggcaagtaggggaaaacaattcttaattgttgggacaaaaaataaagca 240
Query: 241 gctgatttagtgtcgcgggctgcaatacgggctcggtgtcattatgttaataaaaaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctgatttagtgtcgcgggctgcaatacgggctcggtgtcattatgttaataaaaaatgg 300
Query: 301 ctcggcggcatgttaacaaattggtccactaccgaaaaaagacttcataagtttagggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcggcggcatgttaacaaattggtccactaccgaaaaaagacttcataagtttagggac 360
Query: 361 ttgagaactgaacaaaagacagagggattcaaccgtcttccgaaaagggatgcagctgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgagaactgaacaaaagacagagggattcaaccgtcttccgaaaagggatgcagctgtg 420
Query: 421 ttgaagagacaattatctcgcttggaaacatatctaggcgggattaaatatatgacggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgaagagacaattatctcgcttggaaacatatctaggcgggattaaatatatgacggga 480
Query: 481 ttgcctgatattgtaatcatcctcgatcagcaagaagaatatacggctcttagagaatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgcctgatattgtaatcatcctcgatcagcaagaagaatatacggctcttagagaatgt 540
Query: 541 atcactttgggaattccaaccatttctttaatcgatacaaattgtaatcccgatctcgcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcactttgggaattccaaccatttctttaatcgatacaaattgtaatcccgatctcgcg 600
Query: 601 gatatttctattcccgcaaatgatgacgctatagcttcaattcgattcattcttaacaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatatttctattcccgcaaatgatgacgctatagcttcaattcgattcattcttaacaaa 660
Query: 661 ttagtattcgcaatttgtgagggccgttctagctatatacaaaattcttga 711
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttagtattcgcaatttgtgagggccgttctagctatatacaaaattcttga 711
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein similar to HD-Zip homeo
domain OCL4 protein (GI:8920425) [Zea mays]; contains
Pfam PF00046: Homeobox domain and Pfam PF01852: START
domain
Length = 2161
Score = 36.2 bits (18), Expect = 0.39
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 416 ctgtgttgaagagacaat 433
||||||||||||||||||
Sbjct: 1364 ctgtgttgaagagacaat 1381
>At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino-acid
amidohydrolase, putative similar to aminoacylase-1
(N-acyl-L-amino-acid amidohydrolase ACY-1)[Homo sapiens]
SWISS-PROT:Q03154
Length = 1694
Score = 36.2 bits (18), Expect = 0.39
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 543 cactttgggaattccaac 560
||||||||||||||||||
Sbjct: 1173 cactttgggaattccaac 1190
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related contains weak
similarity to cytoplasmic linker protein CLIP-170
(GI:2905649) [Gallus gallus]
Length = 2119
Score = 34.2 bits (17), Expect = 1.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 156 ttttttatcagaagctt 172
|||||||||||||||||
Sbjct: 1095 ttttttatcagaagctt 1079
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains Pfam profile
PF03107: DC1 domain
Length = 1956
Score = 34.2 bits (17), Expect = 1.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 200 ggggaaaacaattctta 216
|||||||||||||||||
Sbjct: 193 ggggaaaacaattctta 209
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,458
Number of Sequences: 29161
Number of extensions: 19458
Number of successful extensions: 385
Number of sequences better than 10.0: 32
length of query: 711
length of database: 44,058,232
effective HSP length: 17
effective length of query: 694
effective length of database: 43,562,495
effective search space: 30232371530
effective search space used: 30232371530
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)