BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rps16.F
(240 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtCg00050 rps16#ribosomal protein S16 476 e-134
At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mit... 36 0.13
At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mit... 36 0.13
At3g54390.1 68416.m06013 expressed protein similar to 6b-in... 36 0.13
At2g42570.1 68415.m05268 expressed protein 36 0.13
>AtCg00050 rps16#ribosomal protein S16
Length = 240
Score = 476 bits (240), Expect = e-134
Identities = 240/240 (100%)
Strand = Plus / Minus
Query: 1 atggtaaaacttcgtttaaaacgatgtggtagaaagcaacgagccgtttatcgaatcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atggtaaaacttcgtttaaaacgatgtggtagaaagcaacgagccgtttatcgaatcctt 181
Query: 61 gcaattgatgttcgataccgaagagaaggaagagatcttagtaaggtgggtttttatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcaattgatgttcgataccgaagagaaggaagagatcttagtaaggtgggtttttatgat 121
Query: 121 cccataactaatcaaacttttttaaacctttctgctattctcgattttcttaaaaaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cccataactaatcaaacttttttaaacctttctgctattctcgattttcttaaaaaagga 61
Query: 181 gctcaaccaacaagaacagctcatgatatttcaaagaaggctgggatttttacggaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gctcaaccaacaagaacagctcatgatatttcaaagaaggctgggatttttacggaatga 1
>At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mitochondrial, putative
similar to NADH-ubiquinone oxidoreductase 75 kDa subunit,
mitochondrial from Solanum tuberosum [SP|Q43644]
Length = 2527
Score = 36.2 bits (18), Expect = 0.13
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 76 taccgaagagaaggaagagatc 97
|||||| |||||||||||||||
Sbjct: 1413 taccgatgagaaggaagagatc 1392
>At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mitochondrial, putative
similar to NADH-ubiquinone oxidoreductase 75 kDa subunit,
mitochondrial from Solanum tuberosum [SP|Q43644]
Length = 2623
Score = 36.2 bits (18), Expect = 0.13
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 76 taccgaagagaaggaagagatc 97
|||||| |||||||||||||||
Sbjct: 1413 taccgatgagaaggaagagatc 1392
>At3g54390.1 68416.m06013 expressed protein similar to 6b-interacting protein 1
(NtSIP1) [Nicotiana tabacum] GI:18149189
Length = 1341
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 80 gaagagaaggaagagatc 97
||||||||||||||||||
Sbjct: 913 gaagagaaggaagagatc 930
>At2g42570.1 68415.m05268 expressed protein
Length = 1386
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 gtagaaagcaacgagccg 46
||||||||||||||||||
Sbjct: 873 gtagaaagcaacgagccg 856
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8687
Number of Sequences: 29161
Number of extensions: 8687
Number of successful extensions: 755
Number of sequences better than 10.0: 78
length of query: 240
length of database: 44,058,232
effective HSP length: 16
effective length of query: 224
effective length of database: 43,591,656
effective search space: 9764530944
effective search space used: 9764530944
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)