BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At5g48045.F
(354 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_669338.1| CoA-linked acetaldehyde dehydrogenase [Yer... 32 3.8
ref|ZP_00265376.1| COG1020: Non-ribosomal peptide synthetas... 32 3.8
ref|NP_405723.1| aldehyde-alcohol dehydrogenase [Yersinia p... 32 3.8
ref|ZP_00265375.1| COG1020: Non-ribosomal peptide synthetas... 32 3.8
ref|NP_175132.1| zinc finger (C3HC4-type RING finger) famil... 31 4.9
ref|NP_294097.1| conserved hypothetical protein [Deinococcu... 31 6.5
gb|AAL77461.1| period locus protein [Drosophila americana t... 31 6.5
gb|AAL77463.1| period locus protein [Drosophila americana t... 31 6.5
gb|AAL77465.1| period locus protein [Drosophila americana t... 31 6.5
gb|AAL77462.1| period locus protein [Drosophila americana t... 31 6.5
>ref|NP_669338.1| CoA-linked acetaldehyde dehydrogenase [Yersinia pestis
KIM]|gi|21958853|gb|AAM85589.1| CoA-linked acetaldehyde
dehydrogenase [Yersinia pestis KIM]
Length = 891
Score = 31.6 bits (70), Expect = 3.8
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 10 NQDVADGVESERLHSASNCSSLSFRH-HMGL-YALVHSTESEHHFPHNAPN 156
N+ + V ER+H+A+ + ++F + +G+ +++ H SE H PH N
Sbjct: 691 NEGAKNPVARERVHNAATIAGIAFANAFLGVCHSMAHKLGSEFHIPHGLAN 741
>ref|ZP_00265376.1| COG1020: Non-ribosomal peptide synthetase modules and related
proteins [Pseudomonas fluorescens PfO-1]
Length = 5422
Score = 31.6 bits (70), Expect = 3.8
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 262 LNRRALSNFPILSAMLCPHGAFGEPATINQLLFDPNLEHCGENDVQTQLNELR 104
LNR LS L+ P+G + + L D N+E+ G ND Q ++ LR
Sbjct: 5195 LNRPELSAERFLNDPFKPNGRMYRTGDVARYLADGNIEYLGRNDDQVKIRGLR 5247
>ref|NP_405723.1| aldehyde-alcohol dehydrogenase [Yersinia
pestis]|gi|45441777|ref|NP_993316.1| aldehyde-alcohol
dehydrogenase [Yersinia pestis biovar Medievalis str.
91001]|gi|25283753|pir||AG0265 alcohol dehydrogenase (EC
1.1.1.1) [imported] - Yersinia pestis (strain
CO92)|gi|15980182|emb|CAC90987.1| aldehyde-alcohol
dehydrogenase [Yersinia pestis
CO92]|gi|45436639|gb|AAS62193.1| aldehyde-alcohol
dehydrogenase [Yersinia pestis biovar Medievalis str.
91001]
Length = 891
Score = 31.6 bits (70), Expect = 3.8
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 10 NQDVADGVESERLHSASNCSSLSFRH-HMGL-YALVHSTESEHHFPHNAPN 156
N+ + V ER+H+A+ + ++F + +G+ +++ H SE H PH N
Sbjct: 691 NEGAKNPVARERVHNAATIAGIAFANAFLGVCHSMAHKLGSEFHIPHGLAN 741
>ref|ZP_00265375.1| COG1020: Non-ribosomal peptide synthetase modules and related
proteins [Pseudomonas fluorescens PfO-1]
Length = 4882
Score = 31.6 bits (70), Expect = 3.8
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -3
Query: 262 LNRRALSNFPILSAMLCPHGAFGEPATINQLLFDPNLEHCGENDVQTQLNELR 104
LNR LS L+ P+G + + L D N+E+ G ND Q ++ LR
Sbjct: 3007 LNRPELSAERFLNDPFKPNGRMYRTGDVARYLADGNIEYLGRNDDQVKIRGLR 3059
>ref|NP_175132.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana]|gi|7767667|gb|AAF69164.1| F27F5.26
[Arabidopsis thaliana]
Length = 645
Score = 31.2 bits (69), Expect = 4.9
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -3
Query: 205 GAFGEPATINQLLFDPNLEHCGENDVQTQLNELRRTTPYDAGSSGCYS*MQNVIFHSQRR 26
G+ A ++Q + NL + G+ND+Q ++ T P A N ++H +R
Sbjct: 20 GSTSSNAVVDQQIRWENLHNYGDNDLQDYMSSAADTNPTFA----------NSVYHEKRG 69
Query: 25 LQRLDL 8
LQR ++
Sbjct: 70 LQRFNI 75
>ref|NP_294097.1| conserved hypothetical protein [Deinococcus radiodurans
R1]|gi|7471315|pir||A75528 conserved hypothetical
protein - Deinococcus radiodurans (strain
R1)|gi|6458051|gb|AAF09953.1| conserved hypothetical
protein [Deinococcus radiodurans]
Length = 100
Score = 30.8 bits (68), Expect = 6.5
Identities = 15/52 (28%), Positives = 24/52 (45%)
Frame = +1
Query: 85 HHMGLYALVHSTESEHHFPHNAPNWDRTKAGLLLPVLQTPHEDIALQKEWES 240
H + A + + H + ++ K+G L P+LQ HE L EWE+
Sbjct: 10 HTRAVLAALLAAYPAHRYGYDLSKQTELKSGTLYPILQRLHEQGYLVAEWEA 61
>gb|AAL77461.1| period locus protein [Drosophila americana texana]
Length = 459
Score = 30.8 bits (68), Expect = 6.5
Identities = 20/61 (32%), Positives = 26/61 (41%)
Frame = +1
Query: 112 HSTESEHHFPHNAPNWDRTKAGLLLPVLQTPHEDIALQKEWESYLGLFCSKRAYTDTPLV 291
H +S ++FP + W GL P + T H IA QK + LF Y PL
Sbjct: 186 HLFQSSYNFPQSINLWPPFSLGLTTPTVHTTHTSIA-QKSFSPQHNLF-PAFYYIPAPLA 243
Query: 292 N 294
N
Sbjct: 244 N 244
>gb|AAL77463.1| period locus protein [Drosophila americana texana]
Length = 459
Score = 30.8 bits (68), Expect = 6.5
Identities = 20/61 (32%), Positives = 26/61 (41%)
Frame = +1
Query: 112 HSTESEHHFPHNAPNWDRTKAGLLLPVLQTPHEDIALQKEWESYLGLFCSKRAYTDTPLV 291
H +S ++FP + W GL P + T H IA QK + LF Y PL
Sbjct: 186 HLFQSSYNFPQSINLWPPFSLGLTTPTVHTTHTSIA-QKSFSPQHNLF-PAFYYIPAPLA 243
Query: 292 N 294
N
Sbjct: 244 N 244
>gb|AAL77465.1| period locus protein [Drosophila americana texana]
Length = 458
Score = 30.8 bits (68), Expect = 6.5
Identities = 20/61 (32%), Positives = 26/61 (41%)
Frame = +1
Query: 112 HSTESEHHFPHNAPNWDRTKAGLLLPVLQTPHEDIALQKEWESYLGLFCSKRAYTDTPLV 291
H +S ++FP + W GL P + T H IA QK + LF Y PL
Sbjct: 185 HLFQSSYNFPQSINLWPPFSLGLTTPTVHTTHTSIA-QKSFSPQHNLF-PAFYYIPAPLA 242
Query: 292 N 294
N
Sbjct: 243 N 243
>gb|AAL77462.1| period locus protein [Drosophila americana texana]
Length = 457
Score = 30.8 bits (68), Expect = 6.5
Identities = 20/61 (32%), Positives = 26/61 (41%)
Frame = +1
Query: 112 HSTESEHHFPHNAPNWDRTKAGLLLPVLQTPHEDIALQKEWESYLGLFCSKRAYTDTPLV 291
H +S ++FP + W GL P + T H IA QK + LF Y PL
Sbjct: 184 HLFQSSYNFPQSINLWPPFSLGLTTPTVHTTHTSIA-QKSFSPQHNLF-PAFYYIPAPLA 241
Query: 292 N 294
N
Sbjct: 242 N 242
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 93
effective length of database: 453,450,204
effective search space used: 10882804896
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)