BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At5g35350.F
(261 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565951.1| nucleoporin interacting component family p... 32 3.3
pir||T00818 hypothetical protein At2g41620 [imported] - Ara... 32 3.3
gb|EAK99923.1| hypothetical protein CaO19.6240 [Candida alb... 32 4.3
gb|EAK99835.1| hypothetical protein CaO19.13620 [Candida al... 32 4.3
gb|AAK97228.2| RNA polymerase [Trypanosoma brucei] 31 5.6
ref|NP_965790.1| cytochrome d ubiquinol oxidase subunit II ... 31 7.3
ref|NP_504385.1| serpentine Receptor, class W (srw-140) [Ca... 31 7.3
ref|NP_191294.1| nucleoporin interacting component-related ... 31 7.3
gb|AAB66000.2| Serpentine receptor, class w protein 140 [Ca... 31 7.3
ref|NP_850108.1| xanthine/uracil permease family protein [A... 30 9.5
>ref|NP_565951.1| nucleoporin interacting component family protein [Arabidopsis
thaliana]|gi|21542465|sp|O22224|Y240_ARATH Protein
At2g41620|gi|14334432|gb|AAK59414.1| unknown protein
[Arabidopsis thaliana]|gi|20196948|gb|AAB84345.2|
expressed protein [Arabidopsis
thaliana]|gi|21281026|gb|AAM44953.1| unknown protein
[Arabidopsis thaliana]
Length = 861
Score = 32.0 bits (71), Expect = 3.3
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 55 KKLKAKTLRNKALSQSIVA 111
KKLKAKTLRN+A SQSI A
Sbjct: 45 KKLKAKTLRNEAPSQSIAA 63
>pir||T00818 hypothetical protein At2g41620 [imported] - Arabidopsis thaliana
Length = 825
Score = 32.0 bits (71), Expect = 3.3
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 55 KKLKAKTLRNKALSQSIVA 111
KKLKAKTLRN+A SQSI A
Sbjct: 54 KKLKAKTLRNEAPSQSIAA 72
>gb|EAK99923.1| hypothetical protein CaO19.6240 [Candida albicans SC5314]
Length = 416
Score = 31.6 bits (70), Expect = 4.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 4 ATTNCLSICFMRWKRYRKKLKAKTLRNKALSQSIVAIPIGFYGLQHY 144
ATTN LS+C ++W +++ K K + + S ++ I G GLQ +
Sbjct: 228 ATTNELSLCQIKWVNHKRVAKIKAVLPEKESVGVLQIFAGPKGLQKH 274
>gb|EAK99835.1| hypothetical protein CaO19.13620 [Candida albicans SC5314]
Length = 1020
Score = 31.6 bits (70), Expect = 4.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 4 ATTNCLSICFMRWKRYRKKLKAKTLRNKALSQSIVAIPIGFYGLQHY 144
ATTN LS+C ++W +++ K K + + S ++ I G GLQ +
Sbjct: 832 ATTNELSLCQIKWVNHKRVAKIKAVLPEKESVGVLQIFAGPKGLQKH 878
>gb|AAK97228.2| RNA polymerase [Trypanosoma brucei]
Length = 1274
Score = 31.2 bits (69), Expect = 5.6
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 28 CFMRWKRYRKKLKAKTLRNKALSQSIVAIPIGFYGLQHYLIVGIIDFGST 177
C M K LK LS+ VA+ + GLQHY +G FG+T
Sbjct: 929 CLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
>ref|NP_965790.1| cytochrome d ubiquinol oxidase subunit II [Lactobacillus johnsonii
NCC 533]|gi|41584150|gb|AAS09756.1| cytochrome d
ubiquinol oxidase subunit II [Lactobacillus johnsonii
NCC 533]
Length = 340
Score = 30.8 bits (68), Expect = 7.3
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -1
Query: 192 VGTITSRTKINDPNNEVMLQTIEPNWNGN 106
VG T ND VM++TI P+W+GN
Sbjct: 33 VGMATQFLAKNDQEKHVMMETIGPHWDGN 61
>ref|NP_504385.1| serpentine Receptor, class W (srw-140) [Caenorhabditis
elegans]|gi|7495234|pir||T31890 hypothetical protein
C03A7.3 - Caenorhabditis elegans
Length = 308
Score = 30.8 bits (68), Expect = 7.3
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +1
Query: 4 ATTNCLSICFMRWKRYRKKLKAKTLRNK-------ALS-QSIVAIPIGFYGLQHYLIVGI 159
+T CLSI +R + L K +R A+S +V +PI + L Y I GI
Sbjct: 132 STWLCLSIALLRILVMKNPLNQKYMRLVNPIGAFYAISIMVLVNVPITVFNLMKYTIKGI 191
Query: 160 IDFGSTGYCSYNGRFTYKCD 219
I C NGR TY D
Sbjct: 192 I---RKSLCFPNGRVTYYMD 208
>ref|NP_191294.1| nucleoporin interacting component-related [Arabidopsis
thaliana]|gi|11280530|pir||T45813 hypothetical protein
F28O9.200 - Arabidopsis
thaliana|gi|6735314|emb|CAB68141.1| putative protein
[Arabidopsis thaliana]
Length = 875
Score = 30.8 bits (68), Expect = 7.3
Identities = 15/19 (78%), Positives = 17/19 (88%)
Frame = +1
Query: 55 KKLKAKTLRNKALSQSIVA 111
+KLKAKTLRN+A SQSI A
Sbjct: 58 RKLKAKTLRNEAPSQSIAA 76
>gb|AAB66000.2| Serpentine receptor, class w protein 140 [Caenorhabditis elegans]
Length = 379
Score = 30.8 bits (68), Expect = 7.3
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = +1
Query: 4 ATTNCLSICFMRWKRYRKKLKAKTLRNK-------ALS-QSIVAIPIGFYGLQHYLIVGI 159
+T CLSI +R + L K +R A+S +V +PI + L Y I GI
Sbjct: 132 STWLCLSIALLRILVMKNPLNQKYMRLVNPIGAFYAISIMVLVNVPITVFNLMKYTIKGI 191
Query: 160 IDFGSTGYCSYNGRFTYKCD 219
I C NGR TY D
Sbjct: 192 I---RKSLCFPNGRVTYYMD 208
>ref|NP_850108.1| xanthine/uracil permease family protein [Arabidopsis
thaliana]|gi|20466159|gb|AAM20397.1| putative membrane
transporter [Arabidopsis
thaliana]|gi|25083906|gb|AAN72132.1| putative membrane
transporter [Arabidopsis
thaliana]|gi|38350523|gb|AAR18374.1|
nucleobase-ascorbate transporter 12 [Arabidopsis
thaliana]
Length = 709
Score = 30.4 bits (67), Expect = 9.5
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +1
Query: 112 IPIGFYGLQHYL 147
+PIGFYGLQHYL
Sbjct: 180 VPIGFYGLQHYL 191
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 62
effective length of database: 512,204,442
effective search space used: 12292906608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)