BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At5g32480.F
(492 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH74646.1| Unknown (protein for MGC:69349) [Xenopus tro... 36 0.27
ref|XP_379601.1| hypothetical protein XP_379601 [Homo sapiens] 35 0.46
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix ... 35 0.46
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; pl... 35 0.46
gb|AAH36187.1| Serine/arginine repetitive matrix 1 [Homo sa... 35 0.46
ref|NP_005830.2| serine/arginine repetitive matrix 1; Ser/A... 35 0.46
gb|AAC09321.1| Ser/Arg-related nuclear matrix protein [Homo... 35 0.46
ref|NP_828400.1| hypothetical protein SAV7224 [Streptomyces... 35 0.61
ref|XP_386254.1| hypothetical protein FG06078.1 [Gibberella... 34 1.0
gb|EAA51335.1| hypothetical protein MG09352.4 [Magnaporthe ... 34 1.0
>gb|AAH74646.1| Unknown (protein for MGC:69349) [Xenopus tropicalis]
Length = 874
Score = 36.2 bits (82), Expect = 0.27
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 580 RRYSPPIQRRYSPSPPPKRRTSSPP 604
>ref|XP_379601.1| hypothetical protein XP_379601 [Homo sapiens]
Length = 306
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 170 RRYSPPIQRRYSPSPPPKRRTASPP 194
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 648 RRYSPPIQRRYSPSPPPKRRTASPP 672
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus]|gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 613 RRYSPPIQRRYSPSPPPKRRTASPP 637
>gb|AAH36187.1| Serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 594 RRYSPPIQRRYSPSPPPKRRTASPP 618
>ref|NP_005830.2| serine/arginine repetitive matrix 1; Ser/Arg-related nuclear matrix
protein; plenty of prolines 101-like [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 594 RRYSPPIQRRYSPSPPPKRRTASPP 618
>gb|AAC09321.1| Ser/Arg-related nuclear matrix protein [Homo
sapiens]|gi|33150824|gb|AAP97290.1| Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 343 RRFSPPLHHRYSTSPPSTNQIDSPP 269
RR+SPP+ RYS SPP + SPP
Sbjct: 592 RRYSPPIQRRYSPSPPPKRRTASPP 616
>ref|NP_828400.1| hypothetical protein SAV7224 [Streptomyces avermitilis
MA-4680]|gi|29610890|dbj|BAC74935.1| hypothetical
protein [Streptomyces avermitilis MA-4680]
Length = 1399
Score = 35.0 bits (79), Expect = 0.61
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Frame = +1
Query: 130 WSYELEKAVLRQGRVVMLGRRSIGVGN----------DGEMRSLNVINVRRSSEAVM--- 270
W Y+ ++ +GR+++ G+ G DG+ R+L+ R++ A +
Sbjct: 21 WQYDEQEFAFGEGRLLLRGKNGAGKSKALEMLLPYLLDGDARALDATGTGRTTLAWLMLD 80
Query: 271 ---EENQFGWLMVERSSSDDGEAVRSGDRGMVVGRRWEVTRSSKGDK 402
+ N+ G+L +E +DD E D + +G +RS+K K
Sbjct: 81 GFEQTNRLGYLWLEFVRTDDEE----NDHHLTIGAAVRASRSTKTAK 123
>ref|XP_386254.1| hypothetical protein FG06078.1 [Gibberella zeae
PH-1]|gi|42552177|gb|EAA75020.1| hypothetical protein
FG06078.1 [Gibberella zeae PH-1]
Length = 617
Score = 34.3 bits (77), Expect = 1.0
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -3
Query: 172 LDLASTQLSLAHNSTRLHAKSTSVSPPPIQPL 77
L L S SLAH + LH ++PPP+QP+
Sbjct: 33 LALTSAAASLAHTTRHLHTSPEVITPPPVQPV 64
>gb|EAA51335.1| hypothetical protein MG09352.4 [Magnaporthe grisea 70-15]
Length = 906
Score = 34.3 bits (77), Expect = 1.0
Identities = 28/100 (28%), Positives = 38/100 (38%)
Frame = +1
Query: 115 WREVEWSYELEKAVLRQGRVVMLGRRSIGVGNDGEMRSLNVINVRRSSEAVMEENQFGWL 294
W E W+ E+ + ++ +G VV+ I GN GE+ W
Sbjct: 269 WAETAWA-EVSRRIVDEGIVVV-----IAAGNSGELGP--------------------WA 302
Query: 295 MVERSSSDDGEAVRSGDRGMVVGRRWEVTRSSKGDKGALI 414
M +SS D AV S D M GR W T + G I
Sbjct: 303 MSSGASSPDALAVASVDATMARGRPWAATFNLDGHSNRTI 342
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 116
effective length of database: 409,858,350
effective search space used: 19263342450
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)