BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At5g27900.F
(435 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL50565.1| malonyl CoA:anthocyanin 5-O-glucoside-6'''-O... 32 2.0
ref|NP_810544.1| putative outer membrane protein, probably ... 32 3.4
ref|NP_703259.1| asparagine-rich antigen Pfa35-2 [Plasmodiu... 31 4.4
ref|NP_793392.1| site-specific recombinase, phage integrase... 31 5.7
ref|NP_702448.1| hypothetical protein [Plasmodium falciparu... 30 7.5
emb|CAG03532.1| unnamed protein product [Tetraodon nigrovir... 30 7.5
pir||G86295 hypothetical protein T24D18.19 - Arabidopsis th... 30 9.8
ref|NP_390846.1| acetyl-CoA synthetase [Bacillus subtilis]|... 30 9.8
dbj|BAC42733.1| unknown protein [Arabidopsis thaliana] 30 9.8
emb|CAE66678.1| Hypothetical protein CBG12017 [Caenorhabdit... 30 9.8
>gb|AAL50565.1| malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase
[Perilla frutescens]
Length = 447
Score = 32.3 bits (72), Expect = 2.0
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 373 PQTLE*DLPSSGHDFQWLK*DPLYKTLGYEH-CHE---LDFVINHIKMRL 236
P T E +P S D +WL PL + L Y+H C + LD ++ H+K L
Sbjct: 14 PPTDEVSIPLSFFDMKWLHFHPLRRLLFYDHPCSKPQFLDAIVPHLKQSL 63
>ref|NP_810544.1| putative outer membrane protein, probably involved in nutrient
binding [Bacteroides thetaiotaomicron
VPI-5482]|gi|29338939|gb|AAO76738.1| putative outer
membrane protein, probably involved in nutrient binding
[Bacteroides thetaiotaomicron VPI-5482]
Length = 1119
Score = 31.6 bits (70), Expect = 3.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 273 SWQCSYPKVLYKGSHFNHWKS*PLLGRSYSKVWGKHF 383
SW+ Y +GS FN++ S P L SY+ WG HF
Sbjct: 530 SWKNMYFGSYTRGSMFNYYLS-PNLSSSYTHQWGDHF 565
>ref|NP_703259.1| asparagine-rich antigen Pfa35-2 [Plasmodium falciparum
3D7]|gi|23510631|emb|CAD49016.1| asparagine-rich antigen
Pfa35-2 [Plasmodium falciparum 3D7]
Length = 3063
Score = 31.2 bits (69), Expect = 4.4
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = -3
Query: 307 LYKTLGYEHCHELDFVINHIKMRLKDMKKGNQNSWSNNHVQNYNE---FS*MVGHLIWV* 137
LY + E +N +R ++ K + +N V NYN+ F+ M G ++
Sbjct: 2197 LYMVHNQHNFEEYKNYMNTNVIRYNNLHKKKYVTGTNYQVSNYNDTYHFNNMRGKQYYLN 2256
Query: 136 KHQRNKHXXXXXXXEKTYSKIDNLAKIEKIWSIDHSRRG*NDLS 5
K+ N H K ++ KI + +H G ND++
Sbjct: 2257 KYNYNNHHDMVYTNGKNVDVYKHMRANNKIETYNHMINGMNDIN 2300
>ref|NP_793392.1| site-specific recombinase, phage integrase family [Pseudomonas
syringae pv. tomato str.
DC3000]|gi|28854022|gb|AAO57087.1| site-specific
recombinase, phage integrase family [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 533
Score = 30.8 bits (68), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +3
Query: 303 YKGSHFNHWKS*PLLGRSYSKVWGKHFHHERF 398
Y HF HW LG + + WG+HF + F
Sbjct: 357 YLRQHFTHWSMNMTLGYAMDQDWGQHFDLDLF 388
>ref|NP_702448.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23497632|gb|AAN37172.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1163
Score = 30.4 bits (67), Expect = 7.5
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 253 HIKMRLKDMKKGNQNSWSNNHVQNYNEFS*MVGHLIWV*KHQRNKHXXXXXXXEKTYSKI 74
H K+ K NQ S+ NN+ +N E + L + + N +KTY+ I
Sbjct: 399 HTKIHTHPNKDKNQESFLNNNTKNIQEKYNVYNMLSYNNNNNNNNDVANLFNFKKTYNNI 458
Query: 73 DN 68
DN
Sbjct: 459 DN 460
>emb|CAG03532.1| unnamed protein product [Tetraodon nigroviridis]
Length = 3383
Score = 30.4 bits (67), Expect = 7.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = -2
Query: 149 DLGLEASKKQALVRKLLKRENLFKDR------QPCEDRENL 45
D LE +KQ L+R L+KR++LFK+ C D+ NL
Sbjct: 644 DSELEHEQKQCLLRSLIKRQDLFKEEGMLTLLSRCIDQLNL 684
>pir||G86295 hypothetical protein T24D18.19 - Arabidopsis
thaliana|gi|6587815|gb|AAF18506.1| Similar to gb|U44028
Arabidopsis thaliana transcription factor CKC and
contains a PF|00069 Eukaryotic protein kinase domain
Length = 1016
Score = 30.0 bits (66), Expect = 9.8
Identities = 10/36 (27%), Positives = 22/36 (60%)
Frame = +1
Query: 25 FYYDQYSKFSRSSQGCRSLNKFSRFNNFRTSACFFD 132
+Y+D R+ GCR++ ++S +++F +C +D
Sbjct: 633 WYFDTSDSRYRNPLGCRNMTRYSSYSSFDKCSCEYD 668
>ref|NP_390846.1| acetyl-CoA synthetase [Bacillus
subtilis]|gi|728788|sp|P39062|ACSA_BACSU Acetyl-coenzyme
A synthetase (Acetate--CoA ligase) (Acyl-activating
enzyme) (Acetyl-CoA synthase)|gi|481848|pir||S39646
acetate-CoA ligase (EC 6.2.1.1) acsA - Bacillus
subtilis|gi|348053|gb|AAA68287.1| acetyl-CoA
synthetase|gi|2293224|gb|AAC00302.1| acetyl-CoA
synthetase [Bacillus
subtilis]|gi|2635452|emb|CAB14946.1| acetyl-CoA
synthetase [Bacillus subtilis subsp. subtilis str. 168]
Length = 572
Score = 30.0 bits (66), Expect = 9.8
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 417 ISPPIFKIFHDGSVFPKLWNKIYRVVVTTSNG*NEIPCIKL 295
I+ P+F+ F +G+V +L N +VVVTT IP KL
Sbjct: 125 IAGPLFEAFMEGAVKDRLENSEAKVVVTTPELLERIPVDKL 165
>dbj|BAC42733.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 30.0 bits (66), Expect = 9.8
Identities = 10/36 (27%), Positives = 22/36 (60%)
Frame = +1
Query: 25 FYYDQYSKFSRSSQGCRSLNKFSRFNNFRTSACFFD 132
+Y+D R+ GCR++ ++S +++F +C +D
Sbjct: 259 WYFDTSDSRYRNPLGCRNMTRYSSYSSFDKCSCEYD 294
>emb|CAE66678.1| Hypothetical protein CBG12017 [Caenorhabditis briggsae]
Length = 1296
Score = 30.0 bits (66), Expect = 9.8
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 2/35 (5%)
Frame = -1
Query: 138 RSIKETSTSTKVIEARKLIQRST--TLRRSRKFGV 40
R+I ++ T IE R+ +QR+ T+R SRKFG+
Sbjct: 768 RAIIASAEDTTTIETRRFLQRNRRKTIRSSRKFGI 802
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 120
effective length of database: 402,277,158
effective search space used: 9654651792
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)