BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g32650.F
(75 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174542.1| hypothetical protein [Arabidopsis thaliana] 54 1e-06
pir||S33706 DNA-damage repair protein DRT111 precursor - Ar... 39 0.025
ref|NP_174336.1| DNA-damage-repair/toleration protein, chlo... 39 0.025
ref|NP_918034.1| putative DNA damage repair protein [Oryza ... 33 1.8
>ref|NP_174542.1| hypothetical protein [Arabidopsis thaliana]
Length = 24
Score = 53.9 bits (128), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 1 MGNSLEEGPCMQHSMMRRYSARTS 72
MGNSLEEGPCMQHSMMRRYSARTS
Sbjct: 1 MGNSLEEGPCMQHSMMRRYSARTS 24
>pir||S33706 DNA-damage repair protein DRT111 precursor - Arabidopsis
thaliana|gi|166694|gb|AAA73382.1| [Arabidopsis thaliana
recombination and DNA-damage resistance protein (DRT111)
mRNA, complete cds.], gene product
Length = 383
Score = 39.3 bits (90), Expect = 0.025
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 3 GQ*FGGRTVHATLYDEKIFSKNEL 74
G+ FGGRTV AT YDE+ FSKNEL
Sbjct: 350 GRYFGGRTVRATFYDEEKFSKNEL 373
>ref|NP_174336.1| DNA-damage-repair/toleration protein, chloroplast (DRT111)
[Arabidopsis thaliana]|gi|20141383|sp|P42698|D111_ARATH
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor|gi|25372792|pir||G86429 hypothetical protein
F26G16.10 - Arabidopsis
thaliana|gi|6634771|gb|AAF19751.1| Strong similarity to
gi|1169200 DNA-Damage-Repair/Toleration protein (DRT111)
precurser, and contains a G-patch PF|01585 domain and
RNA recognition PF|00076 motif. EST gb|AA395591 comes
from this gene. [Arabidopsis
thaliana]|gi|15028005|gb|AAK76533.1| putative DNA damage
repair protein [Arabidopsis
thaliana]|gi|20259641|gb|AAM14338.1| putative DNA damage
repair protein [Arabidopsis thaliana]
Length = 387
Score = 39.3 bits (90), Expect = 0.025
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 3 GQ*FGGRTVHATLYDEKIFSKNEL 74
G+ FGGRTV AT YDE+ FSKNEL
Sbjct: 354 GRYFGGRTVRATFYDEEKFSKNEL 377
>ref|NP_918034.1| putative DNA damage repair protein [Oryza sativa (japonica
cultivar-group)]|gi|20521490|dbj|BAB91997.1| putative
DNA damage repair protein [Oryza sativa (japonica
cultivar-group)]|gi|21328134|dbj|BAC00713.1| putative
DNA damage repair protein [Oryza sativa (japonica
cultivar-group)]
Length = 368
Score = 33.1 bits (74), Expect = 1.8
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = +3
Query: 3 GQ*FGGRTVHATLYDEKIFSKNEL 74
G+ FGGR V AT +DE+ F KN+L
Sbjct: 334 GRFFGGRVVRATFFDEERFGKNQL 357
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 0
effective length of database: 629,712,918
effective search space used: 15113110032
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)