BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At4g16010.F
(5829 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16015.1 68417.m02430 DC1 domain-containing protein cont... 444 e-123
AtMg00820 orf170#hypothetical protein 48 9e-04
At5g42840.1 68418.m05221 DC1 domain-containing protein cont... 40 0.21
At3g28650.1 68416.m03576 DC1 domain-containing protein sim... 40 0.21
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finge... 40 0.21
>At4g16015.1 68417.m02430 DC1 domain-containing protein contains Pfam profile
PF03107: DC1 domain
Length = 1608
Score = 444 bits (224), Expect = e-123
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 3142 atggaaataattgagggtccaaaagcacatgagcatcctttattccttcttccaaagatg 3201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaaataattgagggtccaaaagcacatgagcatcctttattccttcttccaaagatg 60
Query: 3202 actatgtttacttgtcatttatgtgggctgcaagatgaccggttcccttatgcatgtaac 3261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actatgtttacttgtcatttatgtgggctgcaagatgaccggttcccttatgcatgtaac 120
Query: 3262 ttatgcaatttgagttttcacaaagattgtgccgaatccacaccagagatgaagtattct 3321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatgcaatttgagttttcacaaagattgtgccgaatccacaccagagatgaagtattct 180
Query: 3322 tgtcatcctaaacacattctcaagcgtctcacacgtgttccaag 3365
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtcatcctaaacacattctcaagcgtctcacacgtgttccaag 224
Score = 280 bits (141), Expect = 1e-73
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 3364 agtgtggatatcaattgtgcaaagaatccacttccttccactattgttcaccttaaggct 3423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtgtggatatcaattgtgcaaagaatccacttccttccactattgttcaccttaaggct 360
Query: 3424 catgagcatttactcacccttatgcctcaacggaattttgtttgtgatgcttgtggaatg 3483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catgagcatttactcacccttatgcctcaacggaattttgtttgtgatgcttgtggaatg 420
Query: 3484 gatgacgacccaaatccatat 3504
|||||||||||||||||||||
Sbjct: 421 gatgacgacccaaatccatat 441
>AtMg00820 orf170#hypothetical protein
Length = 513
Score = 48.1 bits (24), Expect = 9e-04
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5303 taaaagctcgcttggttgcaaaaggatttgatcaagaaga 5342
|||| |||||||||||||| ||||| ||| ||||||||||
Sbjct: 263 taaaggctcgcttggttgctaaagggtttcatcaagaaga 302
Score = 48.1 bits (24), Expect = 9e-04
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 2603 taaaagctcgcttggttgcaaaaggatttgatcaagaaga 2642
|||| |||||||||||||| ||||| ||| ||||||||||
Sbjct: 263 taaaggctcgcttggttgctaaagggtttcatcaagaaga 302
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains Pfam profile
PF03107: DC1 domain
Length = 2016
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3460 tttgtttgtgatgcttgtgg 3479
||||||||||||||||||||
Sbjct: 745 tttgtttgtgatgcttgtgg 764
>At3g28650.1 68416.m03576 DC1 domain-containing protein similar to hypothetical
protein GI:4204272 from [Arabidopsis thaliana] contains
weak PHD zinc finger motifs contains weak PHD zinc finger
motifs DC1 domain, a divergent protein kinase C domain of
unknown function.
Length = 1998
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3460 tttgtttgtgatgcttgtgg 3479
||||||||||||||||||||
Sbjct: 751 tttgtttgtgatgcttgtgg 770
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger); weak similarity to interaptin (GI:3549261)
[Dictyostelium discoideum] weak similarity to
Axoneme-associated protein mst101(2) (Swiss-Prot:Q08696)
[Drosophila hydei]
Length = 2424
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4114 tactctagatattgctggtt 4133
||||||||||||||||||||
Sbjct: 759 tactctagatattgctggtt 778
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1414 tactctagatattgctggtt 1433
||||||||||||||||||||
Sbjct: 759 tactctagatattgctggtt 778
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 200,093
Number of Sequences: 29161
Number of extensions: 200093
Number of successful extensions: 4562
Number of sequences better than 10.0: 17
length of query: 5829
length of database: 44,058,232
effective HSP length: 19
effective length of query: 5810
effective length of database: 43,504,173
effective search space: 252759245130
effective search space used: 252759245130
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)