BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At4g03735.F
(342 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_740931.2| cation Diffusion Facilitator family member... 37 0.12
emb|CAE70090.1| Hypothetical protein CBG16532 [Caenorhabdit... 35 0.35
emb|CAE64126.1| Hypothetical protein CBG08742 [Caenorhabdit... 35 0.35
ref|NP_688541.1| glycosyl transferase, group 2 family prote... 35 0.45
ref|NP_703960.1| putative DNA polymerase epsilon, catalytic... 33 1.3
ref|NP_671842.1| hypothetical protein [Arabidopsis thaliana] 32 2.9
ref|NP_009145.1| SEC63-like protein; SEC63, endoplasmic ret... 31 5.0
ref|XP_234266.2| similar to mitogen-activated protein kinas... 31 5.0
pir||T46504 hypothetical protein DKFZp434M179.1 - human (fr... 31 5.0
ref|NP_008370.1|COX1_13186 cytochrome c oxidase subunit I [... 31 5.0
>ref|NP_740931.2| cation Diffusion Facilitator family member (82.3 kD) (cdf-5)
[Caenorhabditis elegans]|gi|24817580|emb|CAD21657.2|
Hypothetical protein Y105E8A.3 [Caenorhabditis elegans]
Length = 746
Score = 36.6 bits (83), Expect = 0.12
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Frame = -2
Query: 290 SSVGSIGYFSGVTMPV----------FKASPSCFQSRTTFVGLNFNGSSVWCFVTSISIA 141
SS SIGYF + V F A CFQ V SSV F + +A
Sbjct: 255 SSGASIGYFHYAALLVIIAVFVFVLDFYAESICFQHVADPVMAAARWSSVTMFSCAFGLA 314
Query: 140 FLWIGLSALVAQSISRNIAFGVFCVVQGAFSLVCFN 33
+LW G L +++ ++ V C + + SL N
Sbjct: 315 YLWYGSQNLGDHALTGGVSITVVCFILASISLTHSN 350
>emb|CAE70090.1| Hypothetical protein CBG16532 [Caenorhabditis briggsae]
Length = 666
Score = 35.0 bits (79), Expect = 0.35
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Frame = +1
Query: 22 TMITLKQTREKAPWTTQNTPNAMLREIDCATRADKPIQRKAIEIEVTKHQ--TD------ 177
T I+ + T E P++ N +E R +K R I IEVTK Q TD
Sbjct: 124 TQISFQSTIENKPYSYHNEEERQTQEQRAFGRLNK--LRGLISIEVTKSQVFTDISSNIF 181
Query: 178 EPLKFKPTNVVLDWKQLGLALNTGIVTPEKYPIEPTE 288
EPL P+N Q G NT V EK +E E
Sbjct: 182 EPLSSTPSNKAHALTQTGKECNTEEVQTEKGEMEDEE 218
>emb|CAE64126.1| Hypothetical protein CBG08742 [Caenorhabditis briggsae]
Length = 743
Score = 35.0 bits (79), Expect = 0.35
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Frame = -2
Query: 290 SSVGSIGYFSGVTMPV----------FKASPSCFQSRTTFVGLNFNGSSVWCFVTSISIA 141
SS+ S+G+F + V F A CFQ V SSV F + +A
Sbjct: 255 SSLASMGFFEYAILLVVVAVFVFVLDFYAESICFQHVADPVMAAARWSSVTMFSCAFGLA 314
Query: 140 FLWIGLSALVAQSISRNIAFGVFCVVQGAFSLVCFN 33
+LW G L +++ ++ V C + + SL N
Sbjct: 315 YLWYGHQNLGDHALTGGVSITVVCFILASISLTHSN 350
>ref|NP_688541.1| glycosyl transferase, group 2 family protein [Streptococcus
agalactiae 2603V/R]|gi|22534578|gb|AAN00414.1| glycosyl
transferase, group 2 family protein [Streptococcus
agalactiae 2603V/R]
Length = 422
Score = 34.7 bits (78), Expect = 0.45
Identities = 22/93 (23%), Positives = 45/93 (47%), Gaps = 3/93 (3%)
Frame = -2
Query: 287 SVGSIGYFSGVTMPVFKASPSCFQSRTTFVGLNFNGSSVWCFVTSISIAFLW---IGLSA 117
+VGSI Y + + CF F+ L FN ++ F++ +S+ + I LS+
Sbjct: 293 AVGSISYIYYILFELLTPFIECFGIVIIFLSLLFNQLNIPFFISLVSLYIFYCVLITLSS 352
Query: 116 LVAQSISRNIAFGVFCVVQGAFSLVCFNVIMVH 18
+ + S+ + G+ +V+ F + F +++H
Sbjct: 353 FLHRIYSQQLVIGILDIVK-VFYIAVFRYLILH 384
>ref|NP_703960.1| putative DNA polymerase epsilon, catalytic subunit a [Plasmodium
falciparum 3D7]|gi|46361254|emb|CAG25115.1| DNA
polymerase epsilon, catalytic subunit a, putative;
putative DNA polymerase epsilon, catalytic subunit a
[Plasmodium falciparum 3D7]
Length = 2907
Score = 33.1 bits (74), Expect = 1.3
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +1
Query: 58 PWTTQNTPNAMLREIDCATRADKPIQRKAIEIEVTKHQTDEPLK---FKPTNVVLDWKQL 228
P T+ + P+ + ++I+ + K I ++ + K T PL K N + D+K
Sbjct: 1291 PITSISVPDWLKKQINISEGKQKKITSFFVKKNIKKEDTTSPLHSADVKLVNDIHDFKDS 1350
Query: 229 GLALNTGIVTPEKYPIEPTEEISDIGKENPEKFPV 333
NT + +K ++ E IS+ E FP+
Sbjct: 1351 NETTNTPLHYTQKESMKNKEHISNQSMEKKSPFPI 1385
>ref|NP_671842.1| hypothetical protein [Arabidopsis thaliana]
Length = 147
Score = 32.0 bits (71), Expect = 2.9
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 285 RRNIRHRQREPGEISGEPM 341
RR+IR++Q EPGE+S EP+
Sbjct: 60 RRSIRYKQMEPGEVSDEPL 78
>ref|NP_009145.1| SEC63-like protein; SEC63, endoplasmic reticulum translocon
component (S. cerevisiae) like [Homo
sapiens]|gi|18203500|sp|Q9UGP8|SC63_HUMAN Translocation
protein SEC63 homolog|gi|3978517|gb|AAC83375.1| SEC63
[Homo sapiens]|gi|5327054|emb|CAB46275.1| SEC63 protein
[Homo sapiens]|gi|28502837|gb|AAH47221.1| SEC63-like
protein [Homo sapiens]
Length = 760
Score = 31.2 bits (69), Expect = 5.0
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 154 EVTKHQTDEPLKFKPTNVVLDW-KQLGLALNTGIVTPEKYPIEPTEEISDIGKENPEK 324
+ K + +PLK KPT V+L KQ G+V E E EE+SD G ++ E+
Sbjct: 522 KTAKSKKKKPLKKKPTPVLLPQSKQQKQKQANGVVGNEAAVKEDEEEVSDKGSDSEEE 579
>ref|XP_234266.2| similar to mitogen-activated protein kinase kinase kinase kinase 5
[Rattus norvegicus]
Length = 1988
Score = 31.2 bits (69), Expect = 5.0
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Frame = +1
Query: 64 TTQNTPNAMLREIDCATRADKPIQRKAIEIEVTKHQTDEPLK-----------FKPTNVV 210
++ + P+A++R +T + +R A EI K Q + PL+ N +
Sbjct: 674 SSADKPHAIIRHTIRSTNRNSRAERTASEINFDKLQFEPPLRKETEARDEMGLSSEPNFI 733
Query: 211 LDWKQLGLALNTGIVTPEKYPIE--PTEEISDIGKENPE 321
L W NTG + YP E P EE S K P+
Sbjct: 734 LHWNPFVDGANTGRI--NSYPEESLPDEEKSSTVKRCPD 770
>pir||T46504 hypothetical protein DKFZp434M179.1 - human
(fragment)|gi|6807848|emb|CAB70701.1| hypothetical
protein [Homo sapiens]
Length = 632
Score = 31.2 bits (69), Expect = 5.0
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 154 EVTKHQTDEPLKFKPTNVVLDW-KQLGLALNTGIVTPEKYPIEPTEEISDIGKENPEK 324
+ K + +PLK KPT V+L KQ G+V E E EE+SD G ++ E+
Sbjct: 394 KTAKSKKKKPLKKKPTPVLLPQSKQQKQKQANGVVGNEAAVKEDEEEVSDKGSDSEEE 451
>ref|NP_008370.1|COX1_13186 cytochrome c oxidase subunit I [Onchocerca
volvulus]|gi|7432820|pir||T11065 cytochrome-c oxidase
(EC 1.9.3.1) chain I - nematode (Onchocerca volvulus)
mitochondrion|gi|2735937|gb|AAC61612.1| cytochrome
oxidase subunit 1 [Onchocerca volvulus]
Length = 548
Score = 31.2 bits (69), Expect = 5.0
Identities = 22/64 (34%), Positives = 29/64 (44%), Gaps = 3/64 (4%)
Frame = -2
Query: 269 YFSGVTMPVFKASPSC---FQSRTTFVGLNFNGSSVWCFVTSISIAFLWIGLSALVAQSI 99
YFS TM + A PS F TF G N +WC+ S F GLS ++ +
Sbjct: 314 YFSAATMII--AIPSAVKIFNWLGTFFGSNQKMQPLWCWTYSFIFLFTVGGLSGIILSAA 371
Query: 98 SRNI 87
S +I
Sbjct: 372 SLDI 375
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 89
effective length of database: 461,031,396
effective search space used: 11064753504
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)