BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g23650.F
(87 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173777.1| expressed protein [Arabidopsis thaliana] 62 4e-09
gb|AAF79591.1| F28C11.19 [Arabidopsis thaliana] 60 1e-08
>ref|NP_173777.1| expressed protein [Arabidopsis thaliana]
Length = 28
Score = 62.0 bits (149), Expect = 4e-09
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 1 MRGEAFIDHSNSPLHPLKRNGKKERTRS 84
MRGEAFIDHSNSPLHPLKRNGKKERTRS
Sbjct: 1 MRGEAFIDHSNSPLHPLKRNGKKERTRS 28
>gb|AAF79591.1| F28C11.19 [Arabidopsis thaliana]
Length = 3134
Score = 60.5 bits (145), Expect = 1e-08
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1 MRGEAFIDHSNSPLHPLKRNGKKERTR 81
MRGEAFIDHSNSPLHPLKRNGKKERTR
Sbjct: 656 MRGEAFIDHSNSPLHPLKRNGKKERTR 682
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 4
effective length of database: 622,131,726
effective search space used: 14931161424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)