BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At3g32110.F
(5736 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C84716 hypothetical protein At2g31080 [imported] - Ara... 1529 0.0
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase... 1091 0.0
pir||G71420 hypothetical protein - Arabidopsis thaliana|gi|... 1025 0.0
pir||C84488 hypothetical protein At2g07730 [imported] - Ara... 979 0.0
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thali... 901 0.0
pir||C84487 hypothetical protein At2g07650 [imported] - Ara... 870 0.0
pir||E84487 hypothetical protein At2g07670 [imported] - Ara... 822 0.0
pir||H85088 hypothetical protein AT4g08830 [imported] - Ara... 796 0.0
ref|NP_680357.1| RNase H domain-containing protein [Arabido... 775 0.0
gb|AAD37019.2| putative non-LTR retrolelement reverse trans... 753 0.0
>pir||C84716 hypothetical protein At2g31080 [imported] - Arabidopsis
thaliana|gi|3746069|gb|AAC63844.1| putative non-LTR
retroelement reverse transcriptase [Arabidopsis thaliana]
Length = 1231
Score = 1529 bits (3960), Expect = 0.0
Identities = 748/1259 (59%), Positives = 926/1259 (73%), Gaps = 12/1259 (0%)
Frame = +1
Query: 1993 VNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDERSGGNGRLSSDSL 2172
++L+VVYAAP+ SRRSGLW L DV+ ++GP++IGGDFNTI+ +DER GGNGRLS DSL
Sbjct: 1 MHLIVVYAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSL 60
Query: 2173 AFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVLHLPF 2352
AFG+WIN+ SLIDLGFKGNKFTW+RGR+E VAKRLDRV CAHARLKWQEA V HLPF
Sbjct: 61 AFGDWINELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPF 120
Query: 2353 LASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDIS---------- 2502
+ASDHAPLYVQL P ++ L WN+++
Sbjct: 121 MASDHAPLYVQLEP----------------------LQQRKLRKWNREVFGDIHVRKEKL 158
Query: 2503 TPEALKVQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHGDRNTKFF 2682
+ +VQ+LL + S D+VLEQEE +W QKSREK+ GDRNT FF
Sbjct: 159 VADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFF 218
Query: 2683 HTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFT 2862
HTSTIIRRRRN+IE L+ +D RW+++ ELE A+ YYKRLYSL+D+ V LP GF
Sbjct: 219 HTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFA 278
Query: 2863 ALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDF 3042
++SEA+ ++L + F+ EV A++SMG++KAPGPDG+QPVFYQQ WE VG SVT+FV++F
Sbjct: 279 SISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEF 338
Query: 3043 FSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIG 3222
F +G P TND L+VLIAKV KPE+I QFRP+SLCNVLFK ITK+MV RLK VI+KLIG
Sbjct: 339 FETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIG 398
Query: 3223 PAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKA 3402
PAQ SFIPGRLS DNIV+VQE VHSMRRKKG KGWMLLKLDLEKAYDR+RWD L++TL+A
Sbjct: 399 PAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEA 458
Query: 3403 AGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLI 3582
AGL W IM V PSM +LWNGE+TD+F P RGLRQGDPLSPYLFVLC+ERLCHLI
Sbjct: 459 AGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLI 518
Query: 3583 ESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVS 3762
E+S+ ++WKPI +S G +LSH+CFADDLILFAEAS+ QIR++R VLE+FC ASGQKVS
Sbjct: 519 EASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVS 578
Query: 3763 LEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSR 3942
LEKSKI+FS NV R++ + ISEESG+ TK+LGKYLG+PILQKR+NKETFGEV++R S+R
Sbjct: 579 LEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSAR 638
Query: 3943 LAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKK 4122
LAGWKGR LS AGR+TLTKAVL+SI VH MS I LP STLD LD+ SR FLWGST+EKKK
Sbjct: 639 LAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKK 698
Query: 4123 QHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVH 4302
QHL++W ++C P+ EGG+G+RSA MNKAL+AKVGWR+L D SLWA+VVR KYKVG V
Sbjct: 699 QHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQ 758
Query: 4303 DRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVP 4482
D +W + WSSTWRSV VGLR+V+ + WV GDG IRFW DRWL + P+ +
Sbjct: 759 DTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDM 818
Query: 4483 LSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDG 4662
+ + + A D W G+GW++ + ++ + + LL+V+V G D ++W T DG
Sbjct: 819 IPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDG 878
Query: 4663 RFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHL 4842
FTV+SA+++L D R +M S + R+WK+ PERVRVF+WLV IMTN ER RRHL
Sbjct: 879 AFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHL 938
Query: 4843 CDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLR--QG 5016
++ +C VC G E+ILHVLRDCPAM IW R++P R FF+ SLLEWL++N+ +G
Sbjct: 939 SENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKG 998
Query: 5017 LMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRL 5196
+ W T+F M +WW WKWRC ++FGE K CRDR++FIKD+A EV + V R
Sbjct: 999 I------WPTLFGMGIWWAWKWRCCDVFGERKICRDRLKFIKDMAEEVRRVHVGAVGNRP 1052
Query: 5197 SGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSA 5376
+G+RV + IRW P +GW KI TDGASRGN GLA+AGG +RN G W GGFA+NIG C+A
Sbjct: 1053 NGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAA 1112
Query: 5377 PLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKD 5556
PLAELWG YYGL +AW K +EL++D ++VVGFL TG+ HPLSFLVRLC F ++D
Sbjct: 1113 PLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRD 1172
Query: 5557 WTVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSEDNDGPARLRRVCL 5733
W VR+SHVYREAN LADGLAN+AF+L LGLH FD P + +LL D +G R V L
Sbjct: 1173 WLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGVRLLLLADVNGTEFPRAVLL 1231
>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 591
Score = 1091 bits (2821), Expect = 0.0
Identities = 550/577 (95%), Positives = 551/577 (95%)
Frame = +1
Query: 52 MVDVGGXXXXXXXXXXXXXSWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGE 231
MVDVGG SWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGE
Sbjct: 1 MVDVGGKDRPPEDPPDKPESWARKVIGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGE 60
Query: 232 PVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFM 411
PVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFM
Sbjct: 61 PVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFM 120
Query: 412 VRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHK 591
VRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHK
Sbjct: 121 VRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHK 180
Query: 592 SILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT 771
SILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT
Sbjct: 181 SILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLT 240
Query: 772 NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREES 951
NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREES
Sbjct: 241 NICSKCGIYGHLVHNCPKELSEQAAAVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREES 300
Query: 952 GLRNSXXXXXXXXXXXXNQRRELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESN 1131
GLRNS NQRRELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESN
Sbjct: 301 GLRNSGVPAGGDRGVGGNQRRELYRRKGAENIALSNSCGRLADDLATKEVRKVANQSESN 360
Query: 1132 KENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHV 1311
KENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHV
Sbjct: 361 KENENIQPRAPREQSVEQGKAVVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHV 420
Query: 1312 RNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL 1491
RNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL
Sbjct: 421 RNNRPTRSLVFGPTKGDYEKLTNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTAL 480
Query: 1492 NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGM 1671
NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGM
Sbjct: 481 NEQECMGQGIVRSGSGVVAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGM 540
Query: 1672 NLVLSGAGVITHERPPAEMDSHALELRSITLGSVYIT 1782
NLVLSGAGVITHERPPAEMDSHALELRSITLGSV +T
Sbjct: 541 NLVLSGAGVITHERPPAEMDSHALELRSITLGSVVVT 577
>pir||G71420 hypothetical protein - Arabidopsis
thaliana|gi|2244915|emb|CAB10337.1| reverse transcriptase
like protein [Arabidopsis
thaliana]|gi|7268307|emb|CAB78601.1| reverse
transcriptase like protein [Arabidopsis thaliana]
Length = 929
Score = 1025 bits (2650), Expect(2) = 0.0
Identities = 524/914 (57%), Positives = 643/914 (70%), Gaps = 30/914 (3%)
Frame = +1
Query: 2212 LGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLT 2391
+GFKGN+FTW+RG E FVAKRLDRVL CAHARLKWQEA L
Sbjct: 1 MGFKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEAL-----------------LC 43
Query: 2392 PEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDISTPEALK----------------- 2520
P + + RRPFRFEAAWLSH GFKELL SW+ +STP AL
Sbjct: 44 PAQNVDARRRPFRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNI 103
Query: 2521 -------------VQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHG 2661
VQ+LL++ Q+ FDV+L QEE +W QKSREK G
Sbjct: 104 HVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALG 163
Query: 2662 DRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQ 2841
DRNT FFHTST+IRRRRN+IEML+D++ RW++ + LE A+DYY++LYSL+D+ V
Sbjct: 164 DRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGT 223
Query: 2842 LPQEGFTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESV 3021
LP EGF L+ + ++L +PF+ EV A+RSMG++KAPGPDG+QPVFYQQ WE VGESV
Sbjct: 224 LPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESV 283
Query: 3022 TKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKG 3201
+KFVM+FF SG P+ TNDVL+VL+AKV KPE+ITQFRP+SLCNVLFK ITK+MV RLK
Sbjct: 284 SKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKN 343
Query: 3202 VINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDL 3381
VI+KLIGPAQ SFIPGRLS DNIVVVQE VHSMRRKKG KGWMLLKLDLEKAYDRIRWD
Sbjct: 344 VISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDF 403
Query: 3382 LEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCI 3561
L +TL+AAGL W++ IM+CV GP M LLWNGEKTD+F P RGLRQGDP+SPYLFVLCI
Sbjct: 404 LAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCI 463
Query: 3562 ERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCG 3741
ERLCH IE+++ WK I ISQ GP++SH+CFADDLILFAEAS+
Sbjct: 464 ERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASV--------------- 508
Query: 3742 ASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEV 3921
QKVSLEKSKI+FS NV RDL I+ E+G+ +T++LGKYLG+P+LQKRINK+TFGEV
Sbjct: 509 --AQKVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEV 566
Query: 3922 IKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWG 4101
++R SSRL+GWK R LS AGR+TLTKAVL SI +HTMS+I LP S L+ LDKVSR FLWG
Sbjct: 567 LERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWG 626
Query: 4102 STLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSK 4281
ST+EK+KQHL++W +VC P+ GGLG+R++ MN+AL+AKVGWR+LND SLWA+V+R K
Sbjct: 627 STVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRK 686
Query: 4282 YKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPI 4461
YKV DVHD +W V K+ WSSTWRS+GVGLR+ + W+ P+
Sbjct: 687 YKVTDVHDSSWLVPKATWSSTWRSIGVGLREGV-----------------AKGWILHEPL 729
Query: 4462 ADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLA 4641
+ LS ++ + W +G GWDM ++ + + L AV++ V G DR++
Sbjct: 730 CTRATCLLSPEELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRIS 789
Query: 4642 WGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNS 4821
W TSDG FTV SA+ +LT ++ + M S + R+W V APERVRVFLWLV Q IMTN
Sbjct: 790 WQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNV 849
Query: 4822 ERKRRHLCDSDVCQ 4863
ER RRH+ D +VCQ
Sbjct: 850 ERVRRHIGDIEVCQ 863
Score = 38.9 bits (89), Expect(2) = 0.0
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = +3
Query: 4962 VVLHYVLIGVALLESKARSYDRG**LVDDVCYGGLVGMEMAV*QYFW 5102
++ V++GVAL ES LVD V YGG+VGME+ V Q FW
Sbjct: 883 ILFSNVIVGVALCESGGNVGVPKERLVDTVQYGGMVGMEVEVWQCFW 929
>pir||C84488 hypothetical protein At2g07730 [imported] - Arabidopsis
thaliana|gi|3327392|gb|AAC26674.1| putative non-LTR
retroelement reverse transcriptase [Arabidopsis thaliana]
Length = 970
Score = 979 bits (2531), Expect = 0.0
Identities = 532/1096 (48%), Positives = 665/1096 (60%), Gaps = 10/1096 (0%)
Frame = +1
Query: 2476 LTSWNKDISTPEALK----------VQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVW 2625
L WN+++ +K VQ+LLD+ S D+VLEQEE +W
Sbjct: 42 LKKWNREVFGDIHVKKEKLVADIKAVQDLLDVMHSDELLAQEEILLKDLDLVLEQEETLW 101
Query: 2626 MQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRL 2805
QKSREK +RN+IE +D D RW+++ ELET A++YY RL
Sbjct: 102 FQKSREK--------------------KRNRIESPKDGDNRWMTDKVELETMALNYYTRL 141
Query: 2806 YSLDDLDAVVEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVF 2985
YSL+D+ AV LP GF L++ + ++L KPF+ EV A++ MG++KA GP
Sbjct: 142 YSLEDVSAVWNMLPIGGFATLTDGEKAALLKPFTSEEVVVAVKGMGRFKASGPYA----- 196
Query: 2986 YQQGWEVVGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFK 3165
TND L+VLIAKV KPE+ITQFRP+SLCNVLFK
Sbjct: 197 ---------------------------ATNDALLVLIAKVAKPERITQFRPMSLCNVLFK 229
Query: 3166 TITKVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLD 3345
ITK++V RLK VI KLIGPAQ +FIPGRLS DNIV+VQE VHSMRRKKG KGWMLLKLD
Sbjct: 230 IITKMIVNRLKKVILKLIGPAQANFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLD 289
Query: 3346 LEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQG 3525
LEKAYDRIRW+ L++TL A GL W IM V PSM +LWNG KTD+F P RGLRQG
Sbjct: 290 LEKAYDRIRWNFLQETLVATGLSEVWTHRIMAGVTDPSMSVLWNGGKTDSFVPARGLRQG 349
Query: 3526 DPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQI 3705
DPLSPYLFVLC+ERLCHLIE+S+ WKP+ +S EAS+ QI
Sbjct: 350 DPLSPYLFVLCLERLCHLIEASVGTWDWKPMALS------------------CEASVAQI 391
Query: 3706 RVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPIL 3885
++R VLE+FC ASGQ VSLEKSKI FS NV RD+ + IS ESG+ T++LGKYLG+PIL
Sbjct: 392 LIIRRVLEQFCEASGQNVSLEKSKIVFSNNVSRDMERLISGESGIGCTRELGKYLGMPIL 451
Query: 3886 QKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLD 4065
QKR+NKET GEV++ SS LAGWK R LS A R+TLTKAVL++I VH MS I LP +TLD
Sbjct: 452 QKRMNKETSGEVLEHVSSSLAGWKSRSLSLAWRITLTKAVLSTIPVHVMSAIILPVATLD 511
Query: 4066 GLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLND 4245
LD W R+ L+D
Sbjct: 512 SLD---------------------WWRL-----------------------------LHD 521
Query: 4246 GSSLWAQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIR 4425
+LWA+V+ KYKVG++ + NW KS+WSSTWRSV VGLR+V+ + WV GDG+ I
Sbjct: 522 KETLWARVLSKKYKVGEMQNSNWLKPKSSWSSTWRSVTVGLREVVAKGVRWVPGDGKTIS 581
Query: 4426 FWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVI 4605
FW+DRWL + Q++ ++ D L
Sbjct: 582 FWSDRWLLQ--------------------------------EQLSAVAKESISADAL--- 606
Query: 4606 VDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFL 4785
D L+W T +G FTV+SA+ +L + R + S ++WK+ APERVRVF+
Sbjct: 607 ------LSDELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFI 660
Query: 4786 WLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQS 4965
WLV + IMTN ER RRHL D C VC G ESILHVLRDCPAM+ IW R++P+R Q
Sbjct: 661 WLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNE 720
Query: 4966 FFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKD 5145
FF S EWL++NL DW T+F+M +WW WKWRC ++FGE K CRDR++FIKD
Sbjct: 721 FF--SQFEWLFTNLDPA----KGDWPTLFSMGIWWAWKWRCGDVFGERKLCRDRLKFIKD 774
Query: 5146 LAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNS 5325
+A EV A+ + + RV + IRW P + W K+ TDGASRG+ GLA+A G + N
Sbjct: 775 IAEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNL 834
Query: 5326 AGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGET 5505
G W GGFA+NIG C APLAELWG YYGL +AW K +EL +DSE+VVGFL TGI +
Sbjct: 835 QGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKA 894
Query: 5506 HPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPISLVML 5685
HPLSFLVRLC F ++DW VR+SHVYREAN LADGLAN+AF L LG H F+ P +++
Sbjct: 895 HPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFFLPLGFHCFEICPEDVLLF 954
Query: 5686 LSEDNDGPARLRRVCL 5733
L ED +G + R V +
Sbjct: 955 LVEDANGTSFPRAVLM 970
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis
thaliana|gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 901 bits (2329), Expect = 0.0
Identities = 452/814 (55%), Positives = 555/814 (67%), Gaps = 2/814 (0%)
Frame = +1
Query: 3298 MRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWN 3477
MRRKKG KGWMLLKLDLEKAYDRIRWD L DTL AAG WV WIM+CV GP M LLWN
Sbjct: 1 MRRKKGSKGWMLLKLDLEKAYDRIRWDFLSDTLVAAGFSEVWVTWIMQCVSGPDMSLLWN 60
Query: 3478 GEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHIC 3657
GEKT FKPLRGLRQGD LSPYLFVLC+ERLCHLIE SI AK+WKPI +S+ GP+LSHIC
Sbjct: 61 GEKTTPFKPLRGLRQGDLLSPYLFVLCMERLCHLIERSINAKQWKPINLSRGGPKLSHIC 120
Query: 3658 FADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESG 3837
FADDLIL F AS ++V ++R + + SG
Sbjct: 121 FADDLIL------------------FAEASVEQVQ-----------IVRRVLEAFCTASG 151
Query: 3838 MKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSI 4017
K + + K FS ++ G+++S +
Sbjct: 152 QKVSLEKSKIF--------------------FSKNVSRELGKLISDESGI---------- 181
Query: 4018 LVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATA 4197
QST D WG +KKKQHLV W++VC P++EGGLG+R+A +
Sbjct: 182 -----------QSTCD----------WG---KKKKQHLVKWSKVCSPKKEGGLGVRAAKS 217
Query: 4198 MNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDV 4377
MN+ALI+KVGWR+L + +SLW V++ KY VG++ D W + K +WSSTWRS+ +GLRDV
Sbjct: 218 MNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDV 277
Query: 4378 IWREQHWVIGDGRQIRFWTDRWLSETPIA--DDSIVPLSLAQMLCTARDLWRDGTGWDMS 4551
+ W+ GDG+QIRFWTDRW+S P+ D+ P ++ A+DLW G GWD +
Sbjct: 278 VSHGVGWIPGDGQQIRFWTDRWVSGKPLLELDNGERPTDCDTVV--AKDLWIPGRGWDFA 335
Query: 4552 QIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSS 4731
+I P+ T+N RL+L AV++D VTGA DRL+W + DG+F+V+SA+ MLT D+ PR +M+S
Sbjct: 336 KIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMAS 395
Query: 4732 LYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDC 4911
+ +WKV+ PERV+ FLWLV NQA+MT ER RRHL S+VCQVC+GG+ES+LHVLRDC
Sbjct: 396 FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDC 455
Query: 4912 PAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCS 5091
PA GIW R+VP+R QQ FF+ SL EWLY NL E WST+FA+ +WWGWKWRC
Sbjct: 456 PAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCG 515
Query: 5092 NIFGENKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDG 5271
NIFGEN CRDRV+F+K+ AVEV A+S V + ++ RV + I W P GW K+NTDG
Sbjct: 516 NIFGENTKCRDRVKFVKEWAVEVYRAHSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDG 575
Query: 5272 ASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLEL 5451
ASRGNPGLASAGGVLR+ GAWCGGF++NIGRCSAP AELWGVYYGLY AW K++ +EL
Sbjct: 576 ASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVEL 635
Query: 5452 EVDSEVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGLANHAFS 5631
EVDSEV+VGFLKTGI ++HPLSFLVRLCH FL KDW VRI HVYREAN LADGLAN+AFS
Sbjct: 636 EVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFS 695
Query: 5632 LSLGLHVFDEIPISLVMLLSEDNDGPARLRRVCL 5733
LSLG H FD +P ++ LL ED G R RRV L
Sbjct: 696 LSLGFHSFDLVPDAMSSLLREDTLGSTRPRRVRL 729
>pir||C84487 hypothetical protein At2g07650 [imported] - Arabidopsis
thaliana|gi|5001454|gb|AAD37021.1| putative non-LTR
retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 870 bits (2247), Expect = 0.0
Identities = 420/669 (62%), Positives = 516/669 (76%)
Frame = +1
Query: 2938 MGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPE 3117
MGKYKAPGPDGFQPVFYQ W++VG+SV++FV+DFF+SG P+ TND +VVLIAKVLKPE
Sbjct: 1 MGKYKAPGPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPE 60
Query: 3118 KITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHS 3297
+ITQFRPISLCNVLFKTITK +V RLK VI+KLI PAQ SFI GRL+ DNIV++QE VHS
Sbjct: 61 RITQFRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHS 120
Query: 3298 MRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWN 3477
MRRKKG KGWMLLKLDLEKAYDRIRW+ LEDTL+A LP W+ WIM+CV PSM LLWN
Sbjct: 121 MRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAVRLPEKWIVWIMQCVTEPSMSLLWN 180
Query: 3478 GEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHIC 3657
E SIA K WKPI +SQ GP+LSHIC
Sbjct: 181 -----------------------------------EHSIARKDWKPISLSQGGPKLSHIC 205
Query: 3658 FADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESG 3837
FADDLILFAEAS+ QIRV+R VLE+FC ASGQKVSLEKSKI+FS+NV RDLGK IS+ESG
Sbjct: 206 FADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGKLISDESG 265
Query: 3838 MKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSI 4017
+ +T++LGKYLG+P+LQ+RINK+TFG+++++ ++RLAGWKGR LS AGR+TLTKAVL+SI
Sbjct: 266 ISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSI 325
Query: 4018 LVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATA 4197
VHTMSTI LP+STLDGLDKVSR+FLWGS++ ++KQHL++W RVC PR EGGLGIR A
Sbjct: 326 PVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQD 385
Query: 4198 MNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDV 4377
MNKAL++KVGWR++ D SLWA+++R Y+V DV D WT +S SSTWRSV +G+R+V
Sbjct: 386 MNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREV 445
Query: 4378 IWREQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQI 4557
+ WVIGDGR+I FW D+WL+ P+A+ + ARDL R+G GWDM+ I
Sbjct: 446 VIPGLSWVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKGMRARDLRRNGIGWDMATI 505
Query: 4558 APFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLY 4737
AP+++ RL L + ++D +TGA DR++WG + DGRF V + ++ LT D++PRQDM +
Sbjct: 506 APYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTTYSFLTRDEAPRQDMKRFF 565
Query: 4738 GRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPA 4917
RVW V APERVR+FLWLV QAIMTN ER RRHL + +CQVC+G ESI+HVLRDCPA
Sbjct: 566 DRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPA 625
Query: 4918 MSGIWDRIV 4944
M GIW R++
Sbjct: 626 MEGIWLRLI 634
Score = 71.2 bits (173), Expect = 3e-10
Identities = 39/79 (49%), Positives = 49/79 (61%), Gaps = 5/79 (6%)
Frame = +1
Query: 5128 VRFIKDLAVEVSIAYSREVELRLSG-----LRVNKPIRWTPPMEGWYKINTDGASRGNPG 5292
+R I DLA EVS A+ L+LSG ++V + + W P EGW K+NTDGAS GNPG
Sbjct: 631 LRLISDLANEVSAAH-----LKLSGNTKEIVQVERQVSWRKPNEGWVKLNTDGASHGNPG 685
Query: 5293 LASAGGVLRNSAGAWCGGF 5349
A+AGG LR+ C GF
Sbjct: 686 EATAGGALRDEEVRLCYGF 704
Score = 63.2 bits (152), Expect = 7e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +1
Query: 5524 VRLCHNFLSKDWTVRISHVYREANSLADGLANHAF 5628
VRLC+ FLS+DW VR+SHVYREAN LADGLAN+ F
Sbjct: 698 VRLCYGFLSRDWLVRVSHVYREANRLADGLANYVF 732
>pir||E84487 hypothetical protein At2g07670 [imported] - Arabidopsis thaliana
Length = 913
Score = 822 bits (2123), Expect = 0.0
Identities = 455/946 (48%), Positives = 583/946 (61%), Gaps = 39/946 (4%)
Frame = +1
Query: 127 IGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKV 306
+GT GG PE ++DDEFV SR+ ++FPNG DGE VITIG+EV+D MN +WKQCM VKV
Sbjct: 1 MGTNAGGRLCPESLMDDEFVSSRMRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKV 60
Query: 307 LGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCL 486
LGR +S+A ++ RLREMWKP GAM+V+DLP FFM+RFE+E+E+L+ALTGGPWRAFGS L
Sbjct: 61 LGRNISIANLNRRLREMWKPQGAMFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYL 120
Query: 487 LVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFER 666
LV+AWSPEF+PL+DEI TTPIWVR+ ++P+S YH SILM +A LG+P+KVD+T LH ER
Sbjct: 121 LVQAWSPEFDPLRDEITTTPIWVRLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVER 180
Query: 667 GRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELSEQAA 846
RFAR+C+EVDL +PL+G LL+NG+RY+V+YEGL NICS+CG+YGHL+H CP+ ++E+
Sbjct: 181 ARFARMCIEVDLAKPLKGTLLLNGERYFVSYEGLANICSRCGMYGHLIHTCPQTIAEKEV 240
Query: 847 AVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREESGLRNSXXXXXXXXXXXXNQRRELYR 1026
+Q + V V+ VP+ DGF +V ++ ++ RE+ +
Sbjct: 241 NAASQ--SAPVVVSGAVPENDGFTVVRRSRKKAAPPQVPVVNGIEGPTGVVGRNLREITQ 298
Query: 1027 RKGAENIALSNSCGRLADDLATKEVRKVANQSESNKENENIQPRAPREQSVEQGK----A 1194
K + NI +SNS G L + + E + NKEN N + + +S+ Q K
Sbjct: 299 GKNSGNILVSNSFGNLDIESSPVEGSEADLSGVQNKENVNTLRKFIQGKSISQDKEGIRE 358
Query: 1195 VVFGALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKL 1374
+ G LE R G GG K++R K + N K NRPT+ LVFGPTKG+ +
Sbjct: 359 GIDGGGLEIRKIGLKGGLKDRRAGFFKPNDQNRQKAKQ-NTNRPTKGLVFGPTKGEVVRS 417
Query: 1375 TNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTALNEQECMGQGIVRSGSGV---- 1542
GK++RVEK + GR G V E + ++ E E ++ +G+ V
Sbjct: 418 ETGKRLRVEKGTMGR--RGGIFVTRTEMEKITESALLSVRENEMDTTSLISAGTRVEGGI 475
Query: 1543 -VAQERSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGMNLVLSGAGVITHERPP 1719
V SP S LV R P R +M L + GV P
Sbjct: 476 GVNGSLSPEAGSSALVAPVIRLP------------LIYRYLMDC-LKWNCRGV----NKP 518
Query: 1720 AEMDSHALELRSITLGSVYITDVLAIFETHAGGDQASRICQGLGFENSFRVDAVGHSGGL 1899
S L+ + DVLA+FETHAGG++A RI Q LGFENSFRVDA G SGG+
Sbjct: 519 NFRRSIRYMLKK------HRIDVLALFETHAGGEKAVRIYQNLGFENSFRVDARGQSGGI 572
Query: 1900 WLLWRTGIGEVSVVDSTDQFIHAKDVNGKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSM 2079
WLLW++ +G+VS+V+S +QFIHAK NG ++L+ VYAAP+ R
Sbjct: 573 WLLWKSEVGDVSIVESAEQFIHAKVGNGLAAIHLLAVYAAPSTRR--------------- 617
Query: 2080 DGPVVIGGDFNTIVRLDERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREE 2259
++GGNG LS DSLAFGEWIN+ SLID+GFKGNKFTWKRGR E
Sbjct: 618 ------------------KNGGNGGLSPDSLAFGEWINELSLIDMGFKGNKFTWKRGRVE 659
Query: 2260 RFFVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEA 2439
FVAKRLDRVLC RLKWQEASV HLPF ASDHAP+Y+QL PEV N RRPFRFEA
Sbjct: 660 STFVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQLEPEVRSNPLRRPFRFEA 719
Query: 2440 AWLSHPGFKELLLTSWNKDISTPEALK------------------------------VQE 2529
AWL+H GFK+LL SWN + TP AL VQE
Sbjct: 720 AWLTHSGFKDLLQASWNTEGETPVALAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQE 779
Query: 2530 LLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIRRR 2709
LL+++Q+ FDVVLEQEEV+W QKSREKW GDRNTK+FHT T++RRR
Sbjct: 780 LLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRR 839
Query: 2710 RNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLP 2847
RN+IEML+ +DG W+S QELE A+DYY RLYS++D+D VVE+LP
Sbjct: 840 RNRIEMLKADDGSWVSQQQELEKMAVDYYSRLYSMEDVDEVVERLP 885
>pir||H85088 hypothetical protein AT4g08830 [imported] - Arabidopsis
thaliana|gi|7267526|emb|CAB78008.1| putative protein
[Arabidopsis thaliana]|gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 796 bits (2055), Expect = 0.0
Identities = 383/662 (57%), Positives = 490/662 (73%)
Frame = +1
Query: 3562 ERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCG 3741
ERLCH+I+ ++A K+WK I +SQ GP++SHICFADDLILFAEAS+ QIRV+R +LE FC
Sbjct: 326 ERLCHMIDRAVAVKEWKSIGLSQGGPKISHICFADDLILFAEASVSQIRVIRRILETFCI 385
Query: 3742 ASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEV 3921
ASGQKVSL+KSKI+FSKNV RDL K IS+ESG+K+T++LGKYLG+PILQ+RINK+TFGEV
Sbjct: 386 ASGQKVSLDKSKIFFSKNVSRDLEKLISKESGIKSTRELGKYLGMPILQRRINKDTFGEV 445
Query: 3922 IKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWG 4101
++R SSRLAGWKGR LSFAGRLTLTK+VL+ I +HTMSTI LPQSTL+GLDK++R FL G
Sbjct: 446 LERVSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLG 505
Query: 4102 STLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSK 4281
S+ EKKK HLVAW RVCLP+ EGGLGIR++ MNKAL++KVGWR++ND SLWA+++RSK
Sbjct: 506 SSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSK 565
Query: 4282 YKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPI 4461
Y+ VGLR+V+ R WV+G+GR I FW+D WLS +
Sbjct: 566 YR------------------------VGLREVVSRGSRWVVGNGRDILFWSDNWLSHEAL 601
Query: 4462 ADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLA 4641
+ +++ + ++ +DLW +G GW + +I P+++ + RL+L AV+VDSVTGA DRL+
Sbjct: 602 INRAVIEIPNSEKELRVKDLWANGLGWKLDKIEPYISYHTRLELAAVVVDSVTGARDRLS 661
Query: 4642 WGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNS 4821
WG ++DG FTVKSA+ +LT D PR +M++ + R+W+V A ERV+ FLW
Sbjct: 662 WGYSADGVFTVKSAYRLLTEDHDPRPNMAAFFDRLWRVVALERVKTFLW----------- 710
Query: 4822 ERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYS 5001
H+ D+ VCQVC+GG E+ILHVL+DCP+++GIW R+V + FF SL WLY
Sbjct: 711 -----HIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYV 765
Query: 5002 NLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEVSIAYSRE 5181
NL G W+T+FA+ VWW WKWRC +FGE CRDRV+F +DLA EVS A++
Sbjct: 766 NLGMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIH 825
Query: 5182 VELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNI 5361
+ RV + + W PP W K+NTDGASRGN GLA+ GGVLR+ G WCGGFA++I
Sbjct: 826 SQNGGLRTRVERLVAWKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDI 885
Query: 5362 GRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFLVRLCHN 5541
G CSAPLAELWGVYYGLYMAW ++ T +ELEVDSE+VVGFL TGI +TH LSFLVRLCH
Sbjct: 886 GVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFLVRLCHG 945
Query: 5542 FL 5547
FL
Sbjct: 946 FL 947
Score = 365 bits (936), Expect = 9e-99
Identities = 203/390 (52%), Positives = 250/390 (64%), Gaps = 1/390 (0%)
Frame = +1
Query: 2155 LSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEAS 2334
+S DSL FGEWIN SLID+GF GNK+TWKRGR E FVAKRLDR+ KW
Sbjct: 1 MSPDSLEFGEWINRVSLIDMGFSGNKYTWKRGRVENTFVAKRLDRLK-------KWNR-- 51
Query: 2335 VLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNKDISTPEA 2514
+V G+ ++ KE L+ E
Sbjct: 52 --------------------DVFGDVKKK--------------KEELMR---------EI 68
Query: 2515 LKVQELLDLHQSXXXXXXXXXXXXXFDVVLEQEEVVW-MQKSREKWFVHGDRNTKFFHTS 2691
VQ+ LD+HQS D++ ++E+++ KSREKW GDRNT +FHT+
Sbjct: 69 QVVQDALDVHQSD-------------DMLRKEEDLIKAFDKSREKWIALGDRNTNYFHTT 115
Query: 2692 TIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALS 2871
TIIRRR+N++E L + +G W+ +A+ELE A+ YY+RLYS+DD+ VV LPQ+G L+
Sbjct: 116 TIIRRRQNRVERLHNEEGTWIFDAKELEALAVQYYQRLYSMDDVLQVVNPLPQDGLERLT 175
Query: 2872 EADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSS 3051
+ SL KPF EVE AIRSMGKYKAPGPDG+QP+FYQ WEVVG SV +F +DFFSS
Sbjct: 176 REEVLSLNKPFLATEVEVAIRSMGKYKAPGPDGYQPIFYQSCWEVVGNSVIRFALDFFSS 235
Query: 3052 GSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQ 3231
G P +TND LVVLI KV KPE++ QFRPISLCN +FK ITK+MV RLK VI KLIGP+Q
Sbjct: 236 GILPPQTNDALVVLIPKVPKPERMNQFRPISLCNAIFKMITKMMVLRLKKVIGKLIGPSQ 295
Query: 3232 TSFIPGRLSTDNIVVVQEVVHSMRRKKGVK 3321
+SFIPGRLS DNIVVVQE VHS+ RKKG K
Sbjct: 296 SSFIPGRLSLDNIVVVQEAVHSLNRKKGRK 325
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 775 bits (2002), Expect = 0.0
Identities = 362/614 (58%), Positives = 465/614 (74%)
Frame = +1
Query: 3874 VPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQ 4053
+PILQKRINK+TF EV++R SSRLAGW+GR LS AGRLTLTKAVL S+ VHTM+TI LP+
Sbjct: 1 MPILQKRINKDTFIEVLERASSRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPK 60
Query: 4054 STLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWR 4233
STLD LD++SR+FLWGST EK+K HL+AW RVCLP+ EGGLGIRSA MN AL++KVGWR
Sbjct: 61 STLDKLDQLSRSFLWGSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWR 120
Query: 4234 VLNDGSSLWAQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDG 4413
++ D +SLWA+V+RSKY++G + D W K N SSTWRS+ GLR+V+ +WV+GDG
Sbjct: 121 LMKDRTSLWARVLRSKYRIGGLRDTTWINTKRNASSTWRSIKSGLREVVIPGMNWVVGDG 180
Query: 4414 RQIRFWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDL 4593
+ I FW D+WL E PI D + V L R+LW +G+GWD+++I P+V++ RL L
Sbjct: 181 KDICFWDDKWLVEDPIRDLAAVELPADFQGIKIRELWHEGSGWDLAKIIPYVSEGVRLRL 240
Query: 4594 LAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERV 4773
L+++VD+VTG++DR +WG T++G+FTVKSA++ L ++ Q+M + RVW+V ERV
Sbjct: 241 LSMVVDTVTGSNDRTSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERV 300
Query: 4774 RVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRR 4953
RVF+WLVV+Q IMT+ ER+RRHL S VCQVC+GG E+ILHVLRDCP+++GIW R+VPR
Sbjct: 301 RVFIWLVVHQVIMTDVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRG 360
Query: 4954 LQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVR 5133
+FF ++L+W+Y NL G W+T+FA+ VWW WKWRC N+FGEN CRDRVR
Sbjct: 361 KITAFFASNILDWVYQNLSDVTEIRGCPWATLFAIVVWWAWKWRCGNVFGENGRCRDRVR 420
Query: 5134 FIKDLAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGV 5313
F+ D A E+ IA+ + G V I+WTPP GW+K+NTDGASRGNPGLA+AGGV
Sbjct: 421 FVVDQAREIWIAHLNLRRGAMRGSEVEMSIKWTPPSTGWFKLNTDGASRGNPGLATAGGV 480
Query: 5314 LRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLKTG 5493
+R+ G WC GF +NIG CSAPLAELWGVYYGL++AW + + LELEVDS +VVGFL+ G
Sbjct: 481 VRDGEGQWCVGFVLNIGICSAPLAELWGVYYGLHIAWERGIRRLELEVDSTLVVGFLQAG 540
Query: 5494 IGETHPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGLANHAFSLSLGLHVFDEIPIS 5673
I ++HPLSFLVRLC+ F+S+DW VRISHVYREAN LADGLAN+AFSL LG H +P
Sbjct: 541 IEDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYAFSLPLGFHACGSMPAP 600
Query: 5674 LVMLLSEDNDGPAR 5715
+ + ED G R
Sbjct: 601 VASIALEDAAGVVR 614
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 753 bits (1944), Expect = 0.0
Identities = 424/941 (45%), Positives = 556/941 (59%), Gaps = 34/941 (3%)
Frame = +1
Query: 127 IGTGLGGMPIPEEILDDEFVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKV 306
+GT GG PE ++DDEFV SR+ ++FPNG DGE VITIG+EV+D MN +WKQCM VKV
Sbjct: 1 MGTNAGGRLCPESLMDDEFVSSRMRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKV 60
Query: 307 LGRKVSLAAVSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCL 486
LGR +S+A ++ RLREMWKP GAM+V+DLP FFM+RFE+E+E+L+ALTGGPWRAFGS L
Sbjct: 61 LGRNISIANLNRRLREMWKPQGAMFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYL 120
Query: 487 LVKAWSPEFNPLKDEIVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFER 666
LV+AWSPEF+PL+DEI TTPIWVR+ ++P+S YH SILM +A LG+P+KVD+T LH ER
Sbjct: 121 LVQAWSPEFDPLRDEITTTPIWVRLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVER 180
Query: 667 GRFARVCVEVDLKRPLQGALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELSEQAA 846
RFAR+C+EVDL +PL+G LL+NG+RY+V+YEGL NICS+CG+YGHL+H CP+ ++E+
Sbjct: 181 ARFARMCIEVDLAKPLKGTLLLNGERYFVSYEGLANICSRCGMYGHLIHTCPQTIAEKEV 240
Query: 847 AVVNQLRVSEVDVANTVPQGDGFIMVNKAGRREESGLRNSXXXXXXXXXXXXNQRRELYR 1026
+Q + V V+ VP+ DGF +V ++ ++ RE+ +
Sbjct: 241 NAASQS--APVVVSGAVPENDGFTVVRRSRKKAAPPQVPVVNGIEGPTGVVGRNLREITQ 298
Query: 1027 RKGAENIALSNSCGRLADDLATKEVRKVANQSESNKENENIQPRAPREQSVEQGKAVVF- 1203
K + NI +SNS G L + + E + NKEN N + + +S+ Q K +
Sbjct: 299 GKNSGNILVSNSFGNLDIESSPVEGSEADLSGVQNKENVNTLRKFIQGKSISQDKEGIRE 358
Query: 1204 ---GALLENRISGPYGGSKEKRPVNKKAGEANGSKPNHVRNNRPTRSLVFGPTKGDYEKL 1374
G LE R G GG K++R K + N K NRPT+ LVFGPTKG+ +
Sbjct: 359 GIDGGGLEIRKIGLKGGLKDRRAGFFKPNDQNRQKAKQ-NTNRPTKGLVFGPTKGEVVRS 417
Query: 1375 TNGKQIRVEKESFGRVTNGTRTVVDGGAATAMEVGVTALNEQECMGQGIVRSGSGVVAQE 1554
GK++RV E+ MG R G V +
Sbjct: 418 ETGKRLRV--------------------------------EKGTMG----RRGGIFVTRT 441
Query: 1555 RSPTVAESDLVGQKSRSPGPGVVTHERPPTSPNRVIMGMNLVLSGAGVITHERPPAEMDS 1734
+ ES L+ + +E TS +I V G G RP DS
Sbjct: 442 EMEKITESALLSVRE---------NEMDTTS---LISAGTRVEGGIG-----RPG---DS 481
Query: 1735 HALELRSITLGSVYITDVLAIFETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWR 1914
AL+L+ I+ G + + G Q +++ VDA G SGG+WLLW+
Sbjct: 482 FALDLQ-ISYG---------LLKVELPGGQQTQLPS---------VDARGQSGGIWLLWK 522
Query: 1915 TGIGEVSVVDSTDQFIHAKDVNGKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVV 2094
+ +G+VS+V+S +QFIHAK NG ++L+ VYAAP+ SRRSGLW L +++S+D P++
Sbjct: 523 SEVGDVSIVESAEQFIHAKVGNGLAAIHLLAVYAAPSVSRRSGLWSLLSRIVQSVDEPII 582
Query: 2095 IGGDFNTIVRLDERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVA 2274
+G D+GFKGNKFTWKRGR E FVA
Sbjct: 583 VG------------------------------------DMGFKGNKFTWKRGRVESTFVA 606
Query: 2275 KRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSH 2454
KRLDRVLC RLKWQEASV HLPF ASDHAP+Y+QL PEV N RRPFRFEAAWL+H
Sbjct: 607 KRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQLEPEVRSNPLRRPFRFEAAWLTH 666
Query: 2455 PGFKELLLTSWNKDISTPEALK------------------------------VQELLDLH 2544
GFK+LL SWN + TP AL VQELL+++
Sbjct: 667 SGFKDLLQASWNTEGETPVALAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQELLEIN 726
Query: 2545 QSXXXXXXXXXXXXXFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIE 2724
Q+ FDVVLEQEEV+W QKSREKW GDRNTK+FHT T++RRRRN+IE
Sbjct: 727 QTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIE 786
Query: 2725 MLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAVVEQLP 2847
ML+ +DG W+S QELE A+DYY RLYS++D+D VVE+LP
Sbjct: 787 MLKADDGSWVSQQQELEKMAVDYYSRLYSMEDVDEVVERLP 827
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 141
effective length of database: 362,475,900
effective search space used: 641582343000
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)