BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g31090.F
         (63 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||D84716  hypothetical protein At2g31090 [imported] - Ara...    50   1e-05
ref|NP_565714.1|  expressed protein [Arabidopsis thaliana]|g...    48   7e-05
gb|AAT01385.1|  unknown protein [Oryza sativa (japonica cult...    39   0.033

>pir||D84716 hypothetical protein At2g31090 [imported] - Arabidopsis thaliana
          Length = 20

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 1  MHMSMLLVCDCTSGDRNWFD 60
          MHMSMLLVCDCTSGDRNWFD
Sbjct: 1  MHMSMLLVCDCTSGDRNWFD 20



>ref|NP_565714.1| expressed protein [Arabidopsis
          thaliana]|gi|20197329|gb|AAC63841.2| expressed protein
          [Arabidopsis thaliana]|gi|21536740|gb|AAM61072.1|
          unknown [Arabidopsis thaliana]
          Length = 75

 Score = 47.8 bits (112), Expect = 7e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 2  CICPCCLCVTVLVEIAIGLI 61
          CICPCCLCVTVLVEIAIGLI
Sbjct: 40 CICPCCLCVTVLVEIAIGLI 59



>gb|AAT01385.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 87

 Score = 38.9 bits (89), Expect = 0.033
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 2   CICPCCLCVTVLVEIAIGLI 61
           CICPCCLCVT+++E A+ LI
Sbjct: 52  CICPCCLCVTLVLEAAVELI 71



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 0
effective length of database: 629,712,918
effective search space used: 15113110032
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)