BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g25990.F
         (60 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_850073.1|  hypothetical protein [Arabidopsis thaliana...    43   0.002
ref|NP_197088.1|  zinc finger protein CONSTANS (CO) [Arabido...    39   0.033

>ref|NP_850073.1| hypothetical protein [Arabidopsis
          thaliana]|gi|7487195|pir||T02624 hypothetical protein
          At2g25990 [imported] - Arabidopsis
          thaliana|gi|3413713|gb|AAC31236.1| unknown protein
          [Arabidopsis thaliana]
          Length = 19

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 1  MAGSQREKLKPRTKGSTRC 57
          MAGSQREKLKPRTKGSTRC
Sbjct: 1  MAGSQREKLKPRTKGSTRC 19



>ref|NP_197088.1| zinc finger protein CONSTANS (CO) [Arabidopsis
           thaliana]|gi|17433022|sp|Q39057|CONS_ARATH Zinc finger
           protein CONSTANS|gi|1076301|pir||A56133 constans protein
           - Arabidopsis thaliana|gi|1161514|emb|CAA64407.1|
           CONSTANS protein [Arabidopsis
           thaliana]|gi|9755629|emb|CAC01783.1| CONSTANS
           [Arabidopsis thaliana]|gi|21554622|gb|AAM63636.1|
           CONSTANS [Arabidopsis
           thaliana]|gi|25054874|gb|AAN71925.1| putative CONSTANS
           protein [Arabidopsis thaliana]
          Length = 373

 Score = 38.9 bits (89), Expect = 0.033
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 3   GRFAKREIETEDQGFNTML 59
           GRFAKREIE E+QGFNTML
Sbjct: 343 GRFAKREIEAEEQGFNTML 361



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 0
effective length of database: 629,712,918
effective search space used: 15113110032
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)