BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g16830.F
(81 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G84544 hypothetical protein At2g16830 [imported] - Ara... 62 5e-09
ref|NP_179277.1| plasma membrane intrinsic protein, putativ... 42 0.005
ref|NP_195236.1| plasma membrane intrinsic protein (SIMIP) ... 36 0.28
gb|AAB36949.1| plasma membrane intrinsic protein PIP3 [Arab... 36 0.28
gb|AAB65787.1| plasma membrane intrinsic protein [Arabidops... 36 0.28
dbj|BAA22098.1| unnamed protein product [Arabidopsis thaliana] 36 0.28
pir||T09796 drought-induced major intrinsic protein PIPc - ... 34 1.1
gb|AAG30607.1| aquaporin [Brassica oleracea] 33 1.8
ref|NP_974489.1| plasma membrane intrinsic protein, putativ... 32 3.1
ref|NP_567178.1| plasma membrane intrinsic protein, putativ... 32 3.1
>pir||G84544 hypothetical protein At2g16830 [imported] - Arabidopsis
thaliana|gi|4581126|gb|AAD24616.1| unknown protein
[Arabidopsis thaliana]
Length = 26
Score = 61.6 bits (148), Expect = 5e-09
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSSWC 78
MMTPYKRLGGGANTVADGQHRNSSWC
Sbjct: 1 MMTPYKRLGGGANTVADGQHRNSSWC 26
>ref|NP_179277.1| plasma membrane intrinsic protein, putative [Arabidopsis
thaliana]|gi|32363440|sp|Q9ZVX8|PI28_ARATH Probable
aquaporin PIP2.8 (Plasma membrane intrinsic protein 3b)
(PIP3b)|gi|25295699|pir||A84545 hypothetical protein
At2g16850 [imported] - Arabidopsis
thaliana|gi|3757514|gb|AAC64216.1| putative plasma
membrane intrinsic protein [Arabidopsis
thaliana]|gi|20197465|gb|AAM15086.1| putative plasma
membrane intrinsic protein [Arabidopsis
thaliana]|gi|28950709|gb|AAO63278.1| At2g16850
[Arabidopsis thaliana]
Length = 278
Score = 41.6 bits (96), Expect = 0.005
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADG 54
MMTPYKRLGGGANTVADG
Sbjct: 138 MMTPYKRLGGGANTVADG 155
>ref|NP_195236.1| plasma membrane intrinsic protein (SIMIP) [Arabidopsis
thaliana]|gi|32363271|sp|P93004|PI27_ARATH Aquaporin
PIP2.7 (Plasma membrane intrinsic protein 3)
(Salt-stress induced major intrinsis
protein)|gi|7441242|pir||T05780 plasma membrane
intrinsic protein M4E13.150 - Arabidopsis
thaliana|gi|2924520|emb|CAA17774.1| plasma membrane
intrinsic protein (SIMIP) [Arabidopsis
thaliana]|gi|7270461|emb|CAB80227.1| plasma membrane
intrinsic protein (SIMIP) [Arabidopsis
thaliana]|gi|15724340|gb|AAL06563.1| AT4g35100/M4E13_150
[Arabidopsis thaliana]|gi|17065454|gb|AAL32881.1| plasma
membrane intrinsic protein (SIMIP) [Arabidopsis
thaliana]|gi|20148503|gb|AAM10142.1| plasma membrane
intrinsic protein (SIMIP) [Arabidopsis
thaliana]|gi|21594556|gb|AAM66021.1| plasma membrane
intrinsic protein SIMIP [Arabidopsis thaliana]
Length = 280
Score = 35.8 bits (81), Expect = 0.28
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSS 72
M TPY LGGGANTVADG + ++
Sbjct: 140 MKTPYNTLGGGANTVADGYSKGTA 163
>gb|AAB36949.1| plasma membrane intrinsic protein PIP3 [Arabidopsis thaliana]
Length = 280
Score = 35.8 bits (81), Expect = 0.28
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSS 72
M TPY LGGGANTVADG + ++
Sbjct: 140 MKTPYNTLGGGANTVADGYSKGTA 163
>gb|AAB65787.1| plasma membrane intrinsic protein [Arabidopsis thaliana]
Length = 280
Score = 35.8 bits (81), Expect = 0.28
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSS 72
M TPY LGGGANTVADG + ++
Sbjct: 140 MKTPYNTLGGGANTVADGYSKGTA 163
>dbj|BAA22098.1| unnamed protein product [Arabidopsis thaliana]
Length = 193
Score = 35.8 bits (81), Expect = 0.28
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSS 72
M TPY LGGGANTVADG + ++
Sbjct: 53 MKTPYNTLGGGANTVADGYSKGTA 76
>pir||T09796 drought-induced major intrinsic protein PIPc - Craterostigma
plantagineum|gi|2440046|emb|CAA04654.1| major intrinsic
protein PIPC [Craterostigma plantagineum]
Length = 198
Score = 33.9 bits (76), Expect = 1.1
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSS 72
M PY RLGGGANTVA G ++ ++
Sbjct: 58 MHNPYNRLGGGANTVAPGYNKGTA 81
>gb|AAG30607.1| aquaporin [Brassica oleracea]
Length = 281
Score = 33.1 bits (74), Expect = 1.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 1 MMTPYKRLGGGANTVADGQHRNSS 72
M TPY LGGGANTVA G + ++
Sbjct: 141 MKTPYNTLGGGANTVAPGYSKGTA 164
>ref|NP_974489.1| plasma membrane intrinsic protein, putative [Arabidopsis thaliana]
Length = 219
Score = 32.3 bits (72), Expect = 3.1
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = +1
Query: 7 TPYKRLGGGANTVADGQHRNS 69
TPY+ LGGGANTVA G + S
Sbjct: 157 TPYQTLGGGANTVAHGYTKGS 177
>ref|NP_567178.1| plasma membrane intrinsic protein, putative [Arabidopsis
thaliana]|gi|32363274|sp|Q39196|PI14_ARATH Probable
aquaporin PIP1.4 (Plasma membrane intrinsic protein 1.4)
(Transmembrane protein C)
(TMP-C)|gi|535780|dbj|BAA05654.1| transmembrane protein
[Arabidopsis thaliana]|gi|20466718|gb|AAM20676.1|
probable plasma membrane intrinsic protein 1c
[Arabidopsis thaliana]|gi|21539581|gb|AAM53343.1|
probable plasma membrane intrinsic protein 1c
[Arabidopsis thaliana]|gi|23198244|gb|AAN15649.1|
probable plasma membrane intrinsic protein 1c
[Arabidopsis thaliana]|gi|30023776|gb|AAP13421.1|
At4g00430 [Arabidopsis thaliana]
Length = 287
Score = 32.3 bits (72), Expect = 3.1
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = +1
Query: 7 TPYKRLGGGANTVADGQHRNS 69
TPY+ LGGGANTVA G + S
Sbjct: 157 TPYQTLGGGANTVAHGYTKGS 177
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 2
effective length of database: 625,922,322
effective search space used: 15022135728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)