BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g12230.F
(84 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84502 probable C-1-tetrahydrofolate synthase [importe... 61 6e-09
gb|AAH08629.1| FTHFSDC1 protein [Homo sapiens] 49 3e-05
gb|AAH45019.1| Mthfd1-prov protein [Xenopus laevis] 49 3e-05
sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytopla... 49 3e-05
ref|NP_758512.2| formyltetrahydrofolate synthetase domain c... 49 3e-05
pir||T17244 hypothetical protein DKFZp586G1517.1 - human (f... 49 3e-05
ref|NP_005947.2| methylenetetrahydrofolate dehydrogenase 1;... 49 3e-05
ref|NP_564571.1| formate--tetrahydrofolate ligase / 10-form... 49 3e-05
emb|CAC03667.1| dJ292B18.2 (novel protein similar to methyl... 49 3e-05
ref|NP_620084.1| methylenetetrahydrofolate dehydrogenase 1;... 49 3e-05
>pir||A84502 probable C-1-tetrahydrofolate synthase [imported] - Arabidopsis
thaliana|gi|4038058|gb|AAC97239.1| putative
C-1-tetrahydrofolate synthase [Arabidopsis thaliana]
Length = 27
Score = 61.2 bits (147), Expect = 6e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1 MLIFVVVISTGWYNEYNAWTSYKTLFL 81
MLIFVVVISTGWYNEYNAWTSYKTLFL
Sbjct: 1 MLIFVVVISTGWYNEYNAWTSYKTLFL 27
>gb|AAH08629.1| FTHFSDC1 protein [Homo sapiens]
Length = 366
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 332 YPLVGTMSTMPGLPTRPCFY 351
>gb|AAH45019.1| Mthfd1-prov protein [Xenopus laevis]
Length = 934
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 900 YPLVGTMSTMPGLPTRPCFY 919
>sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase)
[Includes: Methylenetetrahydrofolate dehydrogenase ;
Methenyltetrahydrofolate cyclohydrolase ;
Formyltetrahydrofolate synthetase ]|gi|88152|pir||A31903
methylenetetrahydrofolate dehydrogenase (NADP) (EC
1.5.1.5) - human|gi|307178|gb|AAA59574.1| MDMCSF (EC
1.5.1.5; EC 3.5.4.9; EC 6.3.4.3)
Length = 935
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 901 YPLVGTMSTMPGLPTRPCFY 920
>ref|NP_758512.2| formyltetrahydrofolate synthetase domain containing 1 [Mus
musculus]|gi|26332671|dbj|BAC30053.1| unnamed protein
product [Mus musculus]
Length = 977
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 943 YPLVGTMSTMPGLPTRPCFY 962
>pir||T17244 hypothetical protein DKFZp586G1517.1 - human
(fragment)|gi|5911903|emb|CAB55934.1| hypothetical
protein [Homo sapiens]
Length = 917
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 883 YPLVGTMSTMPGLPTRPCFY 902
>ref|NP_005947.2| methylenetetrahydrofolate dehydrogenase 1;
5,10-methylenetetrahydrofolate dehydrogenase,
5,10-methylenetetrahydrofolate cyclohydrolase,
10-formyltetrahydrofolate synthetase; NADP-dependent
cyclohydrolase/formyltetrahydrofolate synthetase;
cytoplasmic C-1-tetrahydrofolate synthase; C1-THF
synthase [Homo sapiens]|gi|14602585|gb|AAH09806.1|
Methylenetetrahydrofolate dehydrogenase 1 [Homo sapiens]
Length = 935
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 901 YPLVGTMSTMPGLPTRPCFY 920
>ref|NP_564571.1| formate--tetrahydrofolate ligase / 10-formyltetrahydrofolate
synthetase (THFS) [Arabidopsis
thaliana]|gi|25293735|pir||C96541
10-formyltetrahydrofolate synthetase [imported] -
Arabidopsis thaliana|gi|5921663|gb|AAD56290.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana]|gi|9454559|gb|AAF87882.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana]|gi|12322329|gb|AAG51185.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana]|gi|15451114|gb|AAK96828.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana]|gi|20148441|gb|AAM10111.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana]
Length = 634
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 600 YPLVGTMSTMPGLPTRPCFY 619
>emb|CAC03667.1| dJ292B18.2 (novel protein similar to methylenetetrahydrofolate
dehydrogenase (NADP+ dependent),
methenyltetrahydrofolate cyclohydrolase,
formyltetrahydrofolate synthetase (MTHFD1) (EC 1.5.1.5,
EC 3.5.4.9, EC 6.3.4.3, MTHFC) (translation of cDNA
DKFZp586G1517 (Em:AL117452))) [Homo sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 82 YPLVGTMSTMPGLPTRPCFY 101
>ref|NP_620084.1| methylenetetrahydrofolate dehydrogenase 1; C1-tetrahydrofolate
synthase [Mus musculus]|gi|34921990|sp|Q922D8|C1TC_MOUSE
C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF
synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase ; Methenyltetrahydrofolate cyclohydrolase
; Formyltetrahydrofolate synthetase
]|gi|14250204|gb|AAH08523.1| Methylenetetrahydrofolate
dehydrogenase 1 [Mus musculus]
Length = 935
Score = 48.9 bits (115), Expect = 3e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 901 YPLVGTMSTMPGLPTRPCFY 920
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 3
effective length of database: 624,027,024
effective search space used: 14976648576
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)