BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g06390.F
         (84 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178681.1|  hypothetical protein [Arabidopsis thaliana...    57   1e-07
ref|NP_189810.1|  hypothetical protein [Arabidopsis thaliana...    39   0.025
ref|NP_919472.1|  putative polyprotein [Oryza sativa (japoni...    37   0.16 
ref|NP_911320.1|  P0428D12.15 [Oryza sativa (japonica cultiv...    34   1.1  
ref|NP_914079.1|  P0487H02.26 [Oryza sativa (japonica cultiv...    32   3.1  
ref|NP_913570.1|  unnamed protein product [Oryza sativa (jap...    32   4.0  
dbj|BAB02233.1|  unnamed protein product [Arabidopsis thaliana]    31   6.8  
ref|NP_189651.1|  hypothetical protein [Arabidopsis thaliana]      31   6.8  

>ref|NP_178681.1| hypothetical protein [Arabidopsis
          thaliana]|gi|25411235|pir||A84477 5S ribosomal RNA
          [imported] - Arabidopsis
          thaliana|gi|20197917|gb|AAM15310.1| 5S ribosomal RNA
          [Arabidopsis thaliana]
          Length = 27

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +1

Query: 1  MVPTITSRKVTHPETTPVQARLTVEFS 81
          MVPTITSRKVTHPETTPVQARLTVEFS
Sbjct: 1  MVPTITSRKVTHPETTPVQARLTVEFS 27



>ref|NP_189810.1| hypothetical protein [Arabidopsis thaliana]|gi|11289348|pir||T47282
           hypothetical protein F26B15.40 - Arabidopsis
           thaliana|gi|7543896|emb|CAB87233.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 148

 Score = 39.3 bits (90), Expect = 0.025
 Identities = 18/22 (81%), Positives = 19/22 (85%)
 Frame = -2

Query: 68  VKRAWTGVVSGWVTFREVIVGT 3
           VK AWTG+VS  VTFREVIVGT
Sbjct: 44  VKHAWTGIVSRLVTFREVIVGT 65



>ref|NP_919472.1| putative polyprotein [Oryza sativa (japonica
           cultivar-group)]|gi|19551090|gb|AAL91595.1| Putative
           polyprotein [Oryza sativa (japonica
           cultivar-group)]|gi|31429750|gb|AAP51759.1| putative
           polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 893

 Score = 36.6 bits (83), Expect = 0.16
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -2

Query: 80  ENSTVKRAWTGVVSGWVTFREVIVG 6
           +NS +KRAW+  +SGWVT +++++G
Sbjct: 479 KNSEIKRAWSAAISGWVTDQKILLG 503



>ref|NP_911320.1| P0428D12.15 [Oryza sativa (japonica cultivar-group)]
          Length = 349

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 80  ENSTVKRAWTGVVSGWVTFREVI 12
           +NS VKRAW   +SGWV  RE++
Sbjct: 236 KNSKVKRAWPRAISGWVADREIL 258



>ref|NP_914079.1| P0487H02.26 [Oryza sativa (japonica
           cultivar-group)]|gi|14495218|dbj|BAB60937.1| P0682B08.7
           [Oryza sativa (japonica
           cultivar-group)]|gi|15623806|dbj|BAB67866.1| P0487H02.26
           [Oryza sativa (japonica cultivar-group)]
          Length = 1226

 Score = 32.3 bits (72), Expect = 3.1
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +3

Query: 15  HFPEGHPS*NYSSPSTLNCRVL 80
           +FP GHPS N   PSTLN RVL
Sbjct: 704 NFPVGHPSQNCYRPSTLNLRVL 725



>ref|NP_913570.1| unnamed protein product [Oryza sativa (japonica
           cultivar-group)]|gi|7339719|dbj|BAA92924.1| unnamed
           protein product [Oryza sativa (japonica
           cultivar-group)]|gi|11034691|dbj|BAB17192.1|
           OSJNBa0086P08.1 [Oryza sativa (japonica cultivar-group)]
          Length = 352

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +1

Query: 19  SRKVTHPETTPVQARLTVEF 78
           SR VTHPE  P Q+RLT EF
Sbjct: 319 SRSVTHPEIAPSQSRLTSEF 338



>dbj|BAB02233.1| unnamed protein product [Arabidopsis thaliana]
          Length = 138

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -2

Query: 56 WTGVVSGWVTFREVIVGT 3
          W+ ++ GWVTFREVIVGT
Sbjct: 43 WSNIL-GWVTFREVIVGT 59



>ref|NP_189651.1| hypothetical protein [Arabidopsis thaliana]
          Length = 695

 Score = 31.2 bits (69), Expect = 6.8
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -2

Query: 56 WTGVVSGWVTFREVIVGT 3
          W+ ++ GWVTFREVIVGT
Sbjct: 43 WSNIL-GWVTFREVIVGT 59



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 3
effective length of database: 624,027,024
effective search space used: 14976648576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)