BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g65940.F
         (69 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_201362.1|  Dof-type zinc finger domain-containing pro...    31   6.9  
dbj|BAA78575.1|  Dof zinc finger protein [Oryza sativa]|gi|4...    31   6.9  

>ref|NP_201362.1| Dof-type zinc finger domain-containing protein [Arabidopsis
           thaliana]|gi|8978287|dbj|BAA98178.1| DOF zinc finger
           protein-like [Arabidopsis thaliana]
          Length = 316

 Score = 31.2 bits (69), Expect = 6.9
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = -2

Query: 65  TRSGVLRKVPIDGSCRKT 12
           TR G LR VPI G CRKT
Sbjct: 76  TRGGALRNVPIGGGCRKT 93



>dbj|BAA78575.1| Dof zinc finger protein [Oryza sativa]|gi|46390595|dbj|BAD16079.1|
           Dof zinc finger protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 282

 Score = 31.2 bits (69), Expect = 6.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 65  TRSGVLRKVPIDGSCRKT 12
           T+ GVLR VP+ G CRKT
Sbjct: 80  TKGGVLRNVPVGGGCRKT 97



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 0
effective length of database: 629,712,918
effective search space used: 15113110032
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)