BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01410.F
(1086 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01410.1 68414.m00056 hypothetical protein 2153 0.0
At5g64490.1 68418.m08102 expressed protein 82 1e-14
At5g05657.2 68418.m00621 harpin-induced family protein / HI... 38 0.15
At5g05657.1 68418.m00620 harpin-induced family protein / HI... 38 0.15
At2g29800.1 68415.m03620 kelch repeat-containing F-box fami... 38 0.15
>At1g01410.1 68414.m00056 hypothetical protein
Length = 1086
Score = 2153 bits (1086), Expect = 0.0
Identities = 1086/1086 (100%)
Strand = Plus / Plus
Query: 1 atgactcatgaacgcggctatgatttggcgtcacaagtactaaacatttgcaacgtacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgactcatgaacgcggctatgatttggcgtcacaagtactaaacatttgcaacgtacat 60
Query: 61 cacaagaaactgttttgccatatcacgtaccgtcacttgttggtcttgtcgagtgacgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacaagaaactgttttgccatatcacgtaccgtcacttgttggtcttgtcgagtgacgat 120
Query: 121 aacggttgcgtcatactcaagaaagttataacaatagctgatgatttcttgaaagatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacggttgcgtcatactcaagaaagttataacaatagctgatgatttcttgaaagatgaa 180
Query: 181 ttccttgacctaatcgcacagcacgctcactcgctaagcatgcacgacttaggaatctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttccttgacctaatcgcacagcacgctcactcgctaagcatgcacgacttaggaatctcc 240
Query: 241 ctaatccagcacgtgcttgagcttgattttacaaagaaaaccacacaagacgacaagcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctaatccagcacgtgcttgagcttgattttacaaagaaaaccacacaagacgacaagcgc 300
Query: 301 ttgcacgagctaatggctgagtttgatgaggttctctcgacatcagtaacagcagatgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgcacgagctaatggctgagtttgatgaggttctctcgacatcagtaacagcagatgtt 360
Query: 361 gataagctccataagcttgcctcgaagctaatgttagattctgatctctttttcgagttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gataagctccataagcttgcctcgaagctaatgttagattctgatctctttttcgagttt 420
Query: 421 gtcataacaagacgaggctcgctcatgattcaaattatcctaggaaaatccgaagaagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcataacaagacgaggctcgctcatgattcaaattatcctaggaaaatccgaagaagtc 480
Query: 481 gaccaagttattttggcgggagtgaagcaaaggttcatcgatgttacaacaaacttttac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaccaagttattttggcgggagtgaagcaaaggttcatcgatgttacaacaaacttttac 540
Query: 541 gggtatcgcatcatgatacaaaccataaaagttttcaagaaaagaggtgatttgaaagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gggtatcgcatcatgatacaaaccataaaagttttcaagaaaagaggtgatttgaaagtg 600
Query: 601 tacgaccaaatcctacgcctaatcggagtccacgctctctacctaacaaaggaccctgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tacgaccaaatcctacgcctaatcggagtccacgctctctacctaacaaaggaccctgat 660
Query: 661 atgggaaacaagacgtttcaacacgctattaatctacaccaccaggattgtacgacattc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgggaaacaagacgtttcaacacgctattaatctacaccaccaggattgtacgacattc 720
Query: 721 atcgcgtgtgggcttcaaagccactacattgagctttcgtttctgaaacatggaagcaaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atcgcgtgtgggcttcaaagccactacattgagctttcgtttctgaaacatggaagcaaa 780
Query: 781 attgtggagatgcttatcgatgaccgtatttcgatggtgcctttggttctactcatgatg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 attgtggagatgcttatcgatgaccgtatttcgatggtgcctttggttctactcatgatg 840
Query: 841 gagattgtcaagtgtgatgaagatacgttggtgagattggctactgatgaatatgggaat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gagattgtcaagtgtgatgaagatacgttggtgagattggctactgatgaatatgggaat 900
Query: 901 aacattttgaaaaagtttctggcacttgccaaagagcataaggaagatttctttggtgat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aacattttgaaaaagtttctggcacttgccaaagagcataaggaagatttctttggtgat 960
Query: 961 cttgttgacaagttgaatcctttactcgatagtttgcgcgggactctcggagaaaacatt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cttgttgacaagttgaatcctttactcgatagtttgcgcgggactctcggagaaaacatt 1020
Query: 1021 gtagcaatcatcgactcagaaacagagatggttaaggatcgaattgtttcacaaggaaat 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gtagcaatcatcgactcagaaacagagatggttaaggatcgaattgtttcacaaggaaat 1080
Query: 1081 aattag 1086
||||||
Sbjct: 1081 aattag 1086
>At5g64490.1 68418.m08102 expressed protein
Length = 999
Score = 81.8 bits (41), Expect = 1e-14
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 851 agtgtgatgaagatacgttggtgagattggctactgatgaatatgggaataacattttga 910
||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct: 627 agtgtgatgaagagacgttggtgagattagctaaagatgaatatgggaataaagttttga 686
Query: 911 aaaag 915
|||||
Sbjct: 687 aaaag 691
Score = 40.1 bits (20), Expect = 0.038
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 732 gcttcaaagccactacattgagctttcgtttctgaaacatggaagcaaaattgtggagat 791
|||||| || |||||| |||||||||||||| | | | |||||||| ||||||||||
Sbjct: 534 gcttcatagtcactacgttgagctttcgtttgaggagctaggaagcaacattgtggagaa 593
Query: 792 gctt 795
||||
Sbjct: 594 gctt 597
Score = 38.2 bits (19), Expect = 0.15
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 365 agctccataagcttgcctcgaagctaatgttagattctgatctctttttcgagtttgtca 424
|||||||||||||| | || ||||| | || |||| || |||| ||| | ||||||||||
Sbjct: 167 agctccataagctttcttccaagctgacgtcagatccttatctttttgttgagtttgtca 226
Query: 425 taacaagacgaggct 439
||||| | ||||||
Sbjct: 227 aaacaataagaggct 241
Score = 32.2 bits (16), Expect = 9.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 634 gctctctacctaacaa 649
||||||||||||||||
Sbjct: 436 gctctctacctaacaa 451
>At5g05657.2 68418.m00621 harpin-induced family protein / HIN1 family protein /
harpin-responsive family protein similar to hin1
(GP:1619321) {Nicotiana tabacum}; confirmed by cDNA
sequence Ceres:19481; confirmed by cDNA sequence
Ceres:8166 non-consensus donor splice site (AC) at the
exon|intron boundary at 9522; non-consensus acceptor
splice site (At) at the intron|exon boundary at 9724;
non-consensus donor splice site (GC) at the exon|intron
boundary at 10302; non-consensus acceptor splice site
(TC) at the intron|exon boundary at 10342; confirmed by
cDNA sequence Ceres:8166
Length = 665
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 138 caagaaagttataacaata 156
|||||||||||||||||||
Sbjct: 648 caagaaagttataacaata 630
>At5g05657.1 68418.m00620 harpin-induced family protein / HIN1 family protein /
harpin-responsive family protein similar to hin1
(GP:1619321) {Nicotiana tabacum}; confirmed by cDNA
sequence Ceres:19481; confirmed by cDNA sequence
Ceres:8166 non-consensus donor splice site (AC) at the
exon|intron boundary at 9522; non-consensus acceptor
splice site (At) at the intron|exon boundary at 9724;
non-consensus donor splice site (GC) at the exon|intron
boundary at 10302; non-consensus acceptor splice site
(TC) at the intron|exon boundary at 10342; confirmed by
cDNA sequence Ceres:8166
Length = 824
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 138 caagaaagttataacaata 156
|||||||||||||||||||
Sbjct: 720 caagaaagttataacaata 702
>At2g29800.1 68415.m03620 kelch repeat-containing F-box family protein similar
to SKP1 interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profiles PF01344: Kelch
motif, PF00646: F-box domain
Length = 1245
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 279 aaccacacaagacgacaag 297
|||||||||||||||||||
Sbjct: 906 aaccacacaagacgacaag 888
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,860
Number of Sequences: 29161
Number of extensions: 33860
Number of successful extensions: 726
Number of sequences better than 10.0: 59
length of query: 1086
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1068
effective length of database: 43,533,334
effective search space: 46493600712
effective search space used: 46493600712
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)