BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01400.F
(615 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01400.1 68414.m00055 hypothetical protein 1219 0.0
At3g24430.1 68416.m03066 expressed protein contains Pfam pr... 42 0.005
At5g53330.1 68418.m06628 expressed protein 36 0.34
At4g01990.1 68417.m00266 pentatricopeptide (PPR) repeat-con... 36 0.34
At2g16070.2 68415.m01843 expressed protein 36 0.34
>At1g01400.1 68414.m00055 hypothetical protein
Length = 615
Score = 1219 bits (615), Expect = 0.0
Identities = 615/615 (100%)
Strand = Plus / Plus
Query: 1 atggagagagaggagccaattgcgaggaacgaggtggatcacgaaacgccaacgaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggagagagaggagccaattgcgaggaacgaggtggatcacgaaacgccaacgaaacca 60
Query: 61 gatgaatccgcctctgcatcatctccccgtaggtctgaggaaacgctaaatcagagtacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgaatccgcctctgcatcatctccccgtaggtctgaggaaacgctaaatcagagtacc 120
Query: 121 caaatcaaccaaacgggtccgagatcagtactacatcttcaatcacaagaatcgcatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaatcaaccaaacgggtccgagatcagtactacatcttcaatcacaagaatcgcatctc 180
Query: 181 agcaattccacaaccacccatgcttcgtcgccttctgtcaatgtgactccaaagccagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcaattccacaaccacccatgcttcgtcgccttctgtcaatgtgactccaaagccagac 240
Query: 241 ttgtcttcattttctaatacaacagcgacgcaagaaccgtcaccttctgctggacttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgtcttcattttctaatacaacagcgacgcaagaaccgtcaccttctgctggacttcaa 300
Query: 301 attaggacgattgagaaagaccggtcaccgggctctgccttcccaagacataaaagacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attaggacgattgagaaagaccggtcaccgggctctgccttcccaagacataaaagacta 360
Query: 361 ccagttttcgatgaggtttgctcgggtgcggtgtttccatggtatggaccgcaagaacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccagttttcgatgaggtttgctcgggtgcggtgtttccatggtatggaccgcaagaacca 420
Query: 421 gacttgccttcttcatctggaataggaaccatgtcagcaaacagtcacgatgatcgtcgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacttgccttcttcatctggaataggaaccatgtcagcaaacagtcacgatgatcgtcgc 480
Query: 481 gcctatgaattagcttatcctttaccaagcagagatatacaaagcaaaaaggagctgagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcctatgaattagcttatcctttaccaagcagagatatacaaagcaaaaaggagctgagg 540
Query: 541 aatgctcacctcaaaactcccacagccactctcaccaacactactaccacaaccatccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatgctcacctcaaaactcccacagccactctcaccaacactactaccacaaccatccat 600
Query: 601 ggctccaggacatga 615
|||||||||||||||
Sbjct: 601 ggctccaggacatga 615
>At3g24430.1 68416.m03066 expressed protein contains Pfam profile PF01883:
Domain of unknown function
Length = 1794
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 567 cactctcaccaacactactac 587
|||||||||||||||||||||
Sbjct: 270 cactctcaccaacactactac 250
>At5g53330.1 68418.m06628 expressed protein
Length = 932
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 431 cttcatctggaataggaa 448
||||||||||||||||||
Sbjct: 216 cttcatctggaataggaa 233
>At4g01990.1 68417.m00266 pentatricopeptide (PPR) repeat-containing protein low
similarity to DNA-binding protein [Triticum aestivum]
GI:6958202; contains Pfam profile PF01535: PPR repeat
Length = 1660
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 97 gaggaaacgctaaatcag 114
||||||||||||||||||
Sbjct: 197 gaggaaacgctaaatcag 214
>At2g16070.2 68415.m01843 expressed protein
Length = 1210
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 154 catcttcaatcacaagaa 171
||||||||||||||||||
Sbjct: 941 catcttcaatcacaagaa 924
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,831
Number of Sequences: 29161
Number of extensions: 17831
Number of successful extensions: 1278
Number of sequences better than 10.0: 46
length of query: 615
length of database: 44,058,232
effective HSP length: 17
effective length of query: 598
effective length of database: 43,562,495
effective search space: 26050372010
effective search space used: 26050372010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)