BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01380.F
(252 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01380.1 68414.m00053 myb family transcription factor si... 500 e-141
At4g01060.2 68417.m00144 myb family transcription factor co... 96 2e-19
At4g01060.1 68417.m00143 myb family transcription factor co... 96 2e-19
At5g53200.1 68418.m06613 myb family transcription factor (T... 42 0.002
At2g30420.1 68415.m03706 myb family transcription factor co... 42 0.002
>At1g01380.1 68414.m00053 myb family transcription factor similar to myb homolog
(CPC) GI:2346966 from [Arabidopsis thaliana]
Length = 447
Score = 500 bits (252), Expect = e-141
Identities = 252/252 (100%)
Strand = Plus / Plus
Query: 1 atgaatacgcagcgtaagtcgaagcatcttaagaccaatccaaccattgttgcctcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaatacgcagcgtaagtcgaagcatcttaagaccaatccaaccattgttgcctcttct 60
Query: 61 tctgaagaagtgagcagtcttgagtgggaagaaatagcaatggctcaggaagaagaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctgaagaagtgagcagtcttgagtgggaagaaatagcaatggctcaggaagaagaggat 120
Query: 121 ttgatttgcaggatgtataagcttgtcggtgaaaggtgggatttaatagctgggaggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgatttgcaggatgtataagcttgtcggtgaaaggtgggatttaatagctgggaggatt 180
Query: 181 ccaggaagaacagcagaagagattgagaggttttgggtgatgaagaatcatcgaagatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaggaagaacagcagaagagattgagaggttttgggtgatgaagaatcatcgaagatct 240
Query: 241 caattacgttga 252
||||||||||||
Sbjct: 241 caattacgttga 252
>At4g01060.2 68417.m00144 myb family transcription factor contains PFAM profile:
PF00249 myb-like DNA binding domain
Length = 405
Score = 95.6 bits (48), Expect = 2e-19
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 137 ataagcttgtcggtgaaaggtgggatttaatagctgggaggattccaggaagaacagcag 196
|||||||||||||||| |||||||| | |||||||||||||| ||||||||||| || |
Sbjct: 193 ataagcttgtcggtgacaggtgggaactgatagctgggaggatcccaggaagaaccgctg 252
Query: 197 aagagattgagaggttttgggtgatgaa 224
||| ||||||||||||||||| |||||
Sbjct: 253 gagaaattgagaggttttgggtcatgaa 280
Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 gaagtgagcagtcttgagtgggaag 91
|||||||| ||||||||||||||||
Sbjct: 123 gaagtgagtagtcttgagtgggaag 147
>At4g01060.1 68417.m00143 myb family transcription factor contains PFAM profile:
PF00249 myb-like DNA binding domain
Length = 341
Score = 95.6 bits (48), Expect = 2e-19
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 137 ataagcttgtcggtgaaaggtgggatttaatagctgggaggattccaggaagaacagcag 196
|||||||||||||||| |||||||| | |||||||||||||| ||||||||||| || |
Sbjct: 142 ataagcttgtcggtgacaggtgggaactgatagctgggaggatcccaggaagaaccgctg 201
Query: 197 aagagattgagaggttttgggtgatgaa 224
||| ||||||||||||||||| |||||
Sbjct: 202 gagaaattgagaggttttgggtcatgaa 229
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 agaagtgagcagtcttgagtgggaag 91
||||||||| ||||||||||||||||
Sbjct: 71 agaagtgagtagtcttgagtgggaag 96
>At5g53200.1 68418.m06613 myb family transcription factor (TRIPTYCHON) contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 645
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 142 cttgtcggtgaaaggtgggatttaatagc 170
||||||||||| ||||||||||| |||||
Sbjct: 278 cttgtcggtgataggtgggatttgatagc 306
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 61 tctgaagaagtgagcagt 78
||||||||||||||||||
Sbjct: 197 tctgaagaagtgagcagt 214
>At2g30420.1 68415.m03706 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 339
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 142 cttgtcggtgaaaggtgggatttaatagc 170
||||||||| | |||||||||||||||||
Sbjct: 160 cttgtcggtaataggtgggatttaatagc 188
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,461
Number of Sequences: 29161
Number of extensions: 13461
Number of successful extensions: 1217
Number of sequences better than 10.0: 107
length of query: 252
length of database: 44,058,232
effective HSP length: 16
effective length of query: 236
effective length of database: 43,591,656
effective search space: 10287630816
effective search space used: 10287630816
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)