BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g01380.F
         (252 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01380.1  68414.m00053 myb family transcription factor si...   500   e-141
At4g01060.2  68417.m00144 myb family transcription factor co...    96   2e-19
At4g01060.1  68417.m00143 myb family transcription factor co...    96   2e-19
At5g53200.1  68418.m06613 myb family transcription factor (T...    42   0.002
At2g30420.1  68415.m03706 myb family transcription factor co...    42   0.002
>At1g01380.1 68414.m00053 myb family transcription factor similar to myb homolog
           (CPC) GI:2346966 from [Arabidopsis thaliana]
          Length = 447

 Score =  500 bits (252), Expect = e-141
 Identities = 252/252 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatacgcagcgtaagtcgaagcatcttaagaccaatccaaccattgttgcctcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaatacgcagcgtaagtcgaagcatcttaagaccaatccaaccattgttgcctcttct 60

                                                                       
Query: 61  tctgaagaagtgagcagtcttgagtgggaagaaatagcaatggctcaggaagaagaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctgaagaagtgagcagtcttgagtgggaagaaatagcaatggctcaggaagaagaggat 120

                                                                       
Query: 121 ttgatttgcaggatgtataagcttgtcggtgaaaggtgggatttaatagctgggaggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgatttgcaggatgtataagcttgtcggtgaaaggtgggatttaatagctgggaggatt 180

                                                                       
Query: 181 ccaggaagaacagcagaagagattgagaggttttgggtgatgaagaatcatcgaagatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaggaagaacagcagaagagattgagaggttttgggtgatgaagaatcatcgaagatct 240

                       
Query: 241 caattacgttga 252
           ||||||||||||
Sbjct: 241 caattacgttga 252
>At4g01060.2 68417.m00144 myb family transcription factor contains PFAM profile:
           PF00249 myb-like DNA binding domain
          Length = 405

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                       
Query: 137 ataagcttgtcggtgaaaggtgggatttaatagctgggaggattccaggaagaacagcag 196
           |||||||||||||||| ||||||||  | |||||||||||||| ||||||||||| || |
Sbjct: 193 ataagcttgtcggtgacaggtgggaactgatagctgggaggatcccaggaagaaccgctg 252

                                       
Query: 197 aagagattgagaggttttgggtgatgaa 224
            ||| ||||||||||||||||| |||||
Sbjct: 253 gagaaattgagaggttttgggtcatgaa 280

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 67  gaagtgagcagtcttgagtgggaag 91
           |||||||| ||||||||||||||||
Sbjct: 123 gaagtgagtagtcttgagtgggaag 147
>At4g01060.1 68417.m00143 myb family transcription factor contains PFAM profile:
           PF00249 myb-like DNA binding domain
          Length = 341

 Score = 95.6 bits (48), Expect = 2e-19
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                       
Query: 137 ataagcttgtcggtgaaaggtgggatttaatagctgggaggattccaggaagaacagcag 196
           |||||||||||||||| ||||||||  | |||||||||||||| ||||||||||| || |
Sbjct: 142 ataagcttgtcggtgacaggtgggaactgatagctgggaggatcccaggaagaaccgctg 201

                                       
Query: 197 aagagattgagaggttttgggtgatgaa 224
            ||| ||||||||||||||||| |||||
Sbjct: 202 gagaaattgagaggttttgggtcatgaa 229

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 66 agaagtgagcagtcttgagtgggaag 91
          ||||||||| ||||||||||||||||
Sbjct: 71 agaagtgagtagtcttgagtgggaag 96
>At5g53200.1 68418.m06613 myb family transcription factor (TRIPTYCHON) contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 645

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 142 cttgtcggtgaaaggtgggatttaatagc 170
           ||||||||||| ||||||||||| |||||
Sbjct: 278 cttgtcggtgataggtgggatttgatagc 306

 Score = 36.2 bits (18), Expect = 0.13
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 61  tctgaagaagtgagcagt 78
           ||||||||||||||||||
Sbjct: 197 tctgaagaagtgagcagt 214
>At2g30420.1 68415.m03706 myb family transcription factor contains Pfam profile:
           PF00249 myb-like DNA-binding domain
          Length = 339

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 142 cttgtcggtgaaaggtgggatttaatagc 170
           ||||||||| | |||||||||||||||||
Sbjct: 160 cttgtcggtaataggtgggatttaatagc 188
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,461
Number of Sequences: 29161
Number of extensions: 13461
Number of successful extensions: 1217
Number of sequences better than 10.0: 107
length of query: 252
length of database: 44,058,232
effective HSP length: 16
effective length of query: 236
effective length of database: 43,591,656
effective search space: 10287630816
effective search space used: 10287630816
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)