BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01340.F
(2121 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion ch... 4205 0.0
At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion ch... 751 0.0
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion ch... 143 7e-33
At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion ch... 70 8e-11
At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion ch... 68 3e-10
>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel (CNGC10) (ACBK1)
almost identical to CaM-regulated potassium ion channel
(ACBK1) GI:8515883 from [Arabidopsis thaliana]; contains
Pfam domain, PF00520: Ion transport protein
Length = 2407
Score = 4205 bits (2121), Expect = 0.0
Identities = 2121/2121 (100%)
Strand = Plus / Plus
Query: 1 atgattttgtttaggttcaaagatgaaggcaaaccattatcctctgaatatggttatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgattttgtttaggttcaaagatgaaggcaaaccattatcctctgaatatggttatgga 264
Query: 61 agaaaagctagaccttctttagatagagttttcaagaatgtaaaatggggattcaagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaagctagaccttctttagatagagttttcaagaatgtaaaatggggattcaagaag 324
Query: 121 ccattgagtttcccttcacataaggatcctgaccacaaggaaacatctagtgttactcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccattgagtttcccttcacataaggatcctgaccacaaggaaacatctagtgttactcgg 384
Query: 181 aagaacatcataaacccgcaggattcgtttctccagaactggaacaaaatatttttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaacatcataaacccgcaggattcgtttctccagaactggaacaaaatatttttattt 444
Query: 241 gcttgtgtggttgctttggcgattgatccattgtttttctacattcccattgtcgatagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttgtgtggttgctttggcgattgatccattgtttttctacattcccattgtcgatagc 504
Query: 301 gcaaggcactgtcttactttggactcaaagttggagatagctgcgagtttgcttcgtacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaaggcactgtcttactttggactcaaagttggagatagctgcgagtttgcttcgtacg 564
Query: 361 ctcatcgatgccttttacattattcacattgtgtttcagttcaggacagcttacatcgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcatcgatgccttttacattattcacattgtgtttcagttcaggacagcttacatcgct 624
Query: 421 ccttcttcgcgggtttttggaagaggtgaactggtagatgatgctaaggcaatagcctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttcttcgcgggtttttggaagaggtgaactggtagatgatgctaaggcaatagcctta 684
Query: 481 aagtatctctcttcttacttcatcattgatctactctctatccttcctctcccacagata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtatctctcttcttacttcatcattgatctactctctatccttcctctcccacagata 744
Query: 541 gtagttttagccgttattccaagcgtcaaccagccagtctctttgctaacaaaagactac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtagttttagccgttattccaagcgtcaaccagccagtctctttgctaacaaaagactac 804
Query: 601 cttaaattttccataattgctcaatatgttcctcggattctccgtatgtatccgctttac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttaaattttccataattgctcaatatgttcctcggattctccgtatgtatccgctttac 864
Query: 661 actgaagtgacaagaacatctggcattgttactgaaacagcatgggctggagctgcttgg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 actgaagtgacaagaacatctggcattgttactgaaacagcatgggctggagctgcttgg 924
Query: 721 aacctctctctctatatgttagccagtcatgtgtttggagctttatggtacttaatctca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aacctctctctctatatgttagccagtcatgtgtttggagctttatggtacttaatctca 984
Query: 781 gtagaacgagaagacagatgctggcaagaggcatgcgagaagacaaaaggttgtaatatg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gtagaacgagaagacagatgctggcaagaggcatgcgagaagacaaaaggttgtaatatg 1044
Query: 841 aaattcctctactgtgaaaacgatcgtaacgttagcaacaatttcctgaccacttcttgc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 aaattcctctactgtgaaaacgatcgtaacgttagcaacaatttcctgaccacttcttgc 1104
Query: 901 ccatttctcgaccctggtgatataacaaactcaaccatcttcaactttggcatcttcact 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ccatttctcgaccctggtgatataacaaactcaaccatcttcaactttggcatcttcact 1164
Query: 961 gatgctcttaagagtggcgttgttgaatcacatgatttctggaagaaattcttctactgc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gatgctcttaagagtggcgttgttgaatcacatgatttctggaagaaattcttctactgc 1224
Query: 1021 ttctggtggggtcttcgaaatctgagtgcattgggacagaatctccaaactagcaaattc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 ttctggtggggtcttcgaaatctgagtgcattgggacagaatctccaaactagcaaattc 1284
Query: 1081 gttggtgaaatcatatttgctatatcaatctgcatatctggactagtcttatttgctcta 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gttggtgaaatcatatttgctatatcaatctgcatatctggactagtcttatttgctcta 1344
Query: 1141 cttatcggcaatatgcagaaatatttggagtcaacaacagttcgagaagaggaaatgagg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 cttatcggcaatatgcagaaatatttggagtcaacaacagttcgagaagaggaaatgagg 1404
Query: 1201 gtgagaaagagagatgcagagcagtggatgtctcatagaatgttacctgaagacctgagg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 gtgagaaagagagatgcagagcagtggatgtctcatagaatgttacctgaagacctgagg 1464
Query: 1261 aaacgtatcagaagatatgaacaatatagatggcaagagacaagaggagttgaagaagaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 aaacgtatcagaagatatgaacaatatagatggcaagagacaagaggagttgaagaagaa 1524
Query: 1321 acccttcttcgtaacctccctaaagacctcagaagagatattaaacgccatctttgcctc 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 acccttcttcgtaacctccctaaagacctcagaagagatattaaacgccatctttgcctc 1584
Query: 1381 gatctcctcaagaaagtacctttgtttgagataatggatgagcagttacttgacgcggtt 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 gatctcctcaagaaagtacctttgtttgagataatggatgagcagttacttgacgcggtt 1644
Query: 1441 tgcgataggctaagacctgtgctctacaccgagaacagttacgtgatccgtgaaggagat 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 tgcgataggctaagacctgtgctctacaccgagaacagttacgtgatccgtgaaggagat 1704
Query: 1501 cctgttggggaaatgttgtttgttatgagaggaagactggtaagtgccaccactaatgga 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 cctgttggggaaatgttgtttgttatgagaggaagactggtaagtgccaccactaatgga 1764
Query: 1561 ggaagaagtgggttcttcaatgccgtgaacctaaaggcaagtgatttctgcggagaagat 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ggaagaagtgggttcttcaatgccgtgaacctaaaggcaagtgatttctgcggagaagat 1824
Query: 1621 cttctcccgtgggcattagatcctcaatcttcttctcactttcccatctcgacaagaaca 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 cttctcccgtgggcattagatcctcaatcttcttctcactttcccatctcgacaagaaca 1884
Query: 1681 gttcaagctctcactgaagtcgaagcctttgctctcacagctgaggatctcaagtctgtc 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 gttcaagctctcactgaagtcgaagcctttgctctcacagctgaggatctcaagtctgtc 1944
Query: 1741 gcttcacaattcagacgcctccatagcaagcaactccaacatacttttcggttttactca 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 gcttcacaattcagacgcctccatagcaagcaactccaacatacttttcggttttactca 2004
Query: 1801 gtgcaatggagaacatggagcgtgtcttttatacaagcagcgtggaggagatactgtcgg 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 gtgcaatggagaacatggagcgtgtcttttatacaagcagcgtggaggagatactgtcgg 2064
Query: 1861 aggaagttagccaagtcactacgcgatgaagaagatcgtctccgagaagcgctcgctagt 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 aggaagttagccaagtcactacgcgatgaagaagatcgtctccgagaagcgctcgctagt 2124
Query: 1921 caagataaagaacacaatgctgcaaccgtgtcgtcgtccttgagccttggaggcgctctt 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 caagataaagaacacaatgctgcaaccgtgtcgtcgtccttgagccttggaggcgctctt 2184
Query: 1981 tacgcgtcgcgtttcgcatcaaacgcgcttcacaatctgaggcacaatatctccaacctt 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 tacgcgtcgcgtttcgcatcaaacgcgcttcacaatctgaggcacaatatctccaacctt 2244
Query: 2041 cctcctcgctacactcttcctttgctacctcaaaaacccaccgagcctgacttcaccgcc 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2245 cctcctcgctacactcttcctttgctacctcaaaaacccaccgagcctgacttcaccgcc 2304
Query: 2101 aatcatacaactgacccttag 2121
|||||||||||||||||||||
Sbjct: 2305 aatcatacaactgacccttag 2325
>At4g01010.1 68417.m00136 cyclic nucleotide-regulated ion channel, putative
(CNGC13) similar to CaM-regulated potassium ion channel
(ACBK1) GI:8515883 from [Arabidopsis thaliana]
Length = 2091
Score = 751 bits (379), Expect = 0.0
Identities = 841/995 (84%)
Strand = Plus / Plus
Query: 871 gttagcaacaatttcctgaccacttcttgcccatttctcgaccctggtgatataacaaac 930
||||| ||| |||||||||| || || ||||| ||| || |||||| ||||||||||||
Sbjct: 889 gttagaaacgatttcctgactacctcgtgcccgtttatcaaccctgatgatataacaaat 948
Query: 931 tcaaccatcttcaactttggcatcttcactgatgctcttaagagtggcgttgttgaatca 990
||||| ||||||||||||| ||||| ||||||||| | |||||||| |||||||||||
Sbjct: 949 tcaactgtcttcaactttggtatctttactgatgctttaaagagtgggattgttgaatca 1008
Query: 991 catgatttctggaagaaattcttctactgcttctggtggggtcttcgaaatctgagtgca 1050
|||||||||||||||| |||||||||||||||||||||||| | || ||| | ||||||
Sbjct: 1009 gatgatttctggaagaagttcttctactgcttctggtggggtttgcgtaatttaagtgca 1068
Query: 1051 ttgggacagaatctccaaactagcaaattcgttggtgaaatcatatttgctatatcaatc 1110
|||||||| |||||| | || |||||||||||||| ||||||||||||||| |||||||
Sbjct: 1069 ttgggacaaaatctcaatacaagcaaattcgttggggaaatcatatttgctgtatcaatt 1128
Query: 1111 tgcatatctggactagtcttatttgctctacttatcggcaatatgcagaaatatttggag 1170
|| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 1129 tgtatatctggactagtcttattcgcactacttatcggcaatatgcagaaatacttggaa 1188
Query: 1171 tcaacaacagttcgagaagaggaaatgagggtgagaaagagagatgcagagcagtggatg 1230
||||| ||||| | |||||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct: 1189 tcaactacagtgagggaagaggagatgagagtgagaaaaagagatgcagagcaatggatg 1248
Query: 1231 tctcatagaatgttacctgaagacctgaggaaacgtatcagaagatatgaacaatataga 1290
|||||| |||||||||| || ||| ||||||||||||||||||| ||||| || || | |
Sbjct: 1249 tctcatcgaatgttacccgatgacttgaggaaacgtatcagaaggtatgagcagtacaaa 1308
Query: 1291 tggcaagagacaagaggagttgaagaagaaacccttcttcgtaacctccctaaagacctc 1350
||||| || || |||||||| |||||||||| |||||| ||||| |||||||||||||||
Sbjct: 1309 tggcaggaaactagaggagtagaagaagaaaaccttctgcgtaatctccctaaagacctc 1368
Query: 1351 agaagagatattaaacgccatctttgcctcgatctcctcaagaaagtacctttgtttgag 1410
|| ||||| || ||||||||| | ||||||||||| ||||||||||||||| |||| |||
Sbjct: 1369 aggagagacatcaaacgccatttctgcctcgatcttctcaagaaagtacctctgttcgag 1428
Query: 1411 ataatggatgagcagttacttgacgcggtttgcgataggctaagacctgtgctctacacc 1470
|||||||||||||| || || || || || || || | ||||| ||| ||||||||||||
Sbjct: 1429 ataatggatgagcaattgctagatgccgtgtgtgacaagctaaaaccagtgctctacacc 1488
Query: 1471 gagaacagttacgtgatccgtgaaggagatcctgttggggaaatgttgtttgttatgaga 1530
|||||||| || | || || ||||||||||| || | || ||||||||||| ||||||
Sbjct: 1489 gagaacagctatgcaattcgagaaggagatccagtggaagagatgttgtttgtcatgaga 1548
Query: 1531 ggaagactggtaagtgccaccactaatggaggaagaagtgggttcttcaatgccgtgaac 1590
|||| |||| | || |||||||| || || || | | || ||||| || ||||| ||
Sbjct: 1549 ggaaaactgatgagcgccaccacaaacggtggccggaccggcttctttaacgccgtatac 1608
Query: 1591 ctaaaggcaagtgatttctgcggagaagatcttctcccgtgggcattagatcctcaatct 1650
||||| | ||||| || ||||| |||||||||||| | |||||||||||||||||||||
Sbjct: 1609 ctaaaacctagtgacttttgcggcgaagatcttctcacatgggcattagatcctcaatct 1668
Query: 1651 tcttctcactttcccatctcgacaagaacagttcaagctctcactgaagtcgaagccttt 1710
|| ||||| ||||| || ||||| ||||||||||||||| | || ||||| |||||||||
Sbjct: 1669 tcgtctcattttccgatatcgactagaacagttcaagctttaaccgaagtagaagccttt 1728
Query: 1711 gctctcacagctgaggatctcaagtctgtcgcttcacaattcagacgcctccatagcaag 1770
||||| |||| || ||||||||| ||| |||||||| |||||||| || ||||||||
Sbjct: 1729 gctcttgcagcagatgatctcaagcttgttgcttcacagttcagacgactacatagcaaa 1788
Query: 1771 caactccaacatacttttcggttttactcagtgcaatggagaacatggagcgtgtctttt 1830
|| || ||||||||||| ||||||| || || ||||||||||| ||| | | ||||||
Sbjct: 1789 cagcttcaacatactttcaggttttattcggttcaatggagaacttggggtgcgtctttc 1848
Query: 1831 atacaagcagcgtggaggagatactgtcggaggaa 1865
|||||||| |||||| ||||| | || ||||||||
Sbjct: 1849 atacaagcggcgtggcggagacattgccggaggaa 1883
Score = 428 bits (216), Expect = e-119
Identities = 498/592 (84%)
Strand = Plus / Plus
Query: 214 cagaactggaacaaaatatttttatttgcttgtgtggttgctttggcgattgatccattg 273
||||||||||||||||| ||| | ||||||| ||| |||||||||| ||||||||||||
Sbjct: 229 cagaactggaacaaaatctttctttttgcttcagtgattgctttggctattgatccattg 288
Query: 274 tttttctacattcccattgtcgatagcgcaaggcactgtcttactttggactcaaagttg 333
|||||||| ||||| ||||| ||| | | ||| |||||||||| |||| | || |||
Sbjct: 289 tttttctatattcctattgttgatggagaaagacactgtcttaatttgcatcgtaacttg 348
Query: 334 gagatagctgcgagtttgcttcgtacgctcatcgatgccttttacattattcacattgtg 393
|||||||| || ||| ||||||| ||| | || ||||| || ||||| ||||||||||||
Sbjct: 349 gagatagcagctagtgtgcttcgcacgtttatagatgctttctacatcattcacattgtg 408
Query: 394 tttcagttcaggacagcttacatcgctccttcttcgcgggtttttggaagaggtgaactg 453
|||||||| || || ||||| ||| |||||||||| || ||||| |||||||| || ||
Sbjct: 409 tttcagtttagaactgcttatatctctccttcttctcgtgttttcggaagaggcgagttg 468
Query: 454 gtagatgatgctaaggcaatagccttaaagtatctctcttcttacttcatcattgatcta 513
|| |||||| |||| || |||||| | ||||| ||||| || ||||||||||| |||||
Sbjct: 469 gttgatgatcctaaagctatagccatcaagtacctctcctcctacttcatcatcgatctt 528
Query: 514 ctctctatccttcctctcccacagatagtagttttagccgttattccaagcgtcaaccag 573
|| ||||||||||| ||||||||| | ||||| ||||| || || || | |||||| ||
Sbjct: 529 ctttctatccttccactcccacagcttgtagtcttagctgtcatccccaatgtcaacaag 588
Query: 574 ccagtctctttgctaacaaaagactaccttaaattttccataattgctcaatatgttcct 633
|| ||||||||| | || || ||||| | | | | |||| || ||||||| ||||
Sbjct: 589 ccggtctctttgatcactaaggactatttgataactgtcatatttactcaatacattcca 648
Query: 634 cggattctccgtatgtatccgctttacactgaagtgacaagaacatctggcattgttact 693
||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct: 649 aggattcttcgtatctatccactttacactgaagttacaagaacatctggcatagttact 708
Query: 694 gaaacagcatgggctggagctgcttggaacctctctctctatatgttagccagtcatgtg 753
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 709 gaaaccgcttgggctggagctgcttggaacctatctctctatatgttagccagtcatgtg 768
Query: 754 tttggagctttatggtacttaatctcagtagaacgagaagacagatgctggc 805
|||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 769 tttggagccttatggtacttaatatcagtagaacgagaagacagatgctggc 820
Score = 46.1 bits (23), Expect = 0.001
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1981 tacgcgtcgcgtttcgcatcaaacgcgcttcacaatctg 2019
||||||||||| || || ||||||||||||| |||||||
Sbjct: 1984 tacgcgtcgcggtttgcttcaaacgcgcttcgcaatctg 2022
Score = 42.1 bits (21), Expect = 0.019
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 2059 cctttgctacctcaaaaacccaccgagcctgacttca 2095
||||||||||||| |||||| |||||||||| ||||
Sbjct: 2038 cctttgctacctcctaaaccctccgagcctgatttca 2074
>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel / cyclic
nucleotide-gated channel (CNGC3) identical to cyclic
nucleotide and calmodulin-regulated ion channel
GI:4581201 from [Arabidopsis thaliana]
Length = 2414
Score = 143 bits (72), Expect = 7e-33
Identities = 213/260 (81%)
Strand = Plus / Plus
Query: 1117 tctggactagtcttatttgctctacttatcggcaatatgcagaaatatttggagtcaaca 1176
|||||||||||||| |||||||| || || || |||||||||||||||||| | |||||
Sbjct: 1322 tctggactagtcttgtttgctctcctcattggaaatatgcagaaatatttgcaatcaact 1381
Query: 1177 acagttcgagaagaggaaatgagggtgagaaagagagatgcagagcagtggatgtctcat 1236
|| || ||| ||||||||||| |||| || ||||||||||||||| ||||||||||||
Sbjct: 1382 actgtaagagttgaggaaatgagagtgaaaaggagagatgcagagcaatggatgtctcat 1441
Query: 1237 agaatgttacctgaagacctgaggaaacgtatcagaagatatgaacaatatagatggcaa 1296
| ||||| || || || ||||| ||||||||| | | ||| ||||| |||| |||||||
Sbjct: 1442 cggatgttgccagacgatctgagaaaacgtatccgtaaatacgaacagtataaatggcaa 1501
Query: 1297 gagacaagaggagttgaagaagaaacccttcttcgtaacctccctaaagacctcagaaga 1356
|| || | ||||||||| |||||| | ||||| || || || ||||| |||||||
Sbjct: 1502 gaaaccaaaggagttgaggaagaagctcttctctctagtcttccaaaagatctcagaaag 1561
Query: 1357 gatattaaacgccatctttg 1376
|| |||||||||||||||||
Sbjct: 1562 gacattaaacgccatctttg 1581
Score = 77.8 bits (39), Expect = 3e-13
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 1675 agaacagttcaagctctcactgaagtcgaagcctttgctctcacagctgaggatctcaag 1734
||||| ||||||||| | || |||||||||| |||| |||| ||||||| |||||||||
Sbjct: 1874 agaaccgttcaagctttgacagaagtcgaaggctttcttctctcagctgatgatctcaag 1933
Query: 1735 tctgtcgcttcacaattcagacgcctccatagcaagcaactccaacatacttttcggttt 1794
| ||||||| | || | | |||||||||||||||||||||| ||| | || |||||
Sbjct: 1934 tttgtcgctactcagtatcgtcgcctccatagcaagcaactccgacacatgttcaggttt 1993
Query: 1795 tactcagtgcaatgg 1809
|| ||||||||||||
Sbjct: 1994 tattcagtgcaatgg 2008
Score = 50.1 bits (25), Expect = 8e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1003 aagaaattcttctactgcttctggtggggtcttcgaaatctgagtgcattggg 1055
||||| || |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 1208 aagaagtttttctactgtttctggtggggtctccgcaatcttagtgctttggg 1260
Score = 42.1 bits (21), Expect = 0.019
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1617 agatcttctcccgtgggcattagatcctc 1645
|||||||||| | ||||||||||||||||
Sbjct: 1819 agatcttctcacttgggcattagatcctc 1847
>At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel, putative
(CNGC11) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc3) GI:4581201 from
[Arabidopsis thaliana]
Length = 2019
Score = 69.9 bits (35), Expect = 8e-11
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 1675 agaacagttcaagctctcactgaagtcgaagcctttgctctcacagctgaggatctcaag 1734
||||| |||||||| | || |||||||||| ||||| | || ||||||| |||||||||
Sbjct: 1471 agaaccgttcaagcgttgacagaagtcgaaggctttgttatctcagctgatgatctcaag 1530
Query: 1735 tctgtcgcttcacaattcagacgcctccatagcaagcaactccaaca 1781
| ||||||| | || | | ||||||||||||||||||||||||||
Sbjct: 1531 tttgtcgctactcagtatcgtcgcctccatagcaagcaactccaaca 1577
Score = 48.1 bits (24), Expect = 3e-04
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 241 gcttgtgtggttgctttggcgattgatccattgttt 276
||||| |||||||||||||| |||||||| ||||||
Sbjct: 40 gcttgcgtggttgctttggctattgatcctttgttt 75
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 643 cgtatgtatccgctttacactgaagtgacaaga 675
||||||||||||||||| | ||||||||||||
Sbjct: 433 cgtatgtatccgctttataaagaagtgacaaga 465
Score = 38.2 bits (19), Expect = 0.30
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 1005 gaaattcttctactgcttctggtggggtcttcgaaatctgagtgcattggg 1055
||||||| |||| ||||| ||||||||||| || ||| | ||||| |||||
Sbjct: 807 gaaattcgtctattgcttttggtggggtctccgtaatattagtgctttggg 857
>At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel / cyclic
nucleotide-gated channel (CNGC1) almost identical to
cyclic nucleotide-regulated ion channel 1 pir:T51354,
GI:11357236 from [Arabidopsis thaliana]
Length = 2789
Score = 67.9 bits (34), Expect = 3e-10
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 649 tatccgctttacactgaagtgacaagaacatctggcattgttactgaaacagcatgggct 708
|||||||| |||| ||||| |||||||| || ||||| | ||||| ||||| ||||||
Sbjct: 1105 tatccgctctacaaggaagttacaagaacttcaggcatactcactgagacagcttgggct 1164
Query: 709 ggagctgcttggaacctctctctctatatgttagccagtcatgtgtttggagctttatgg 768
|||||||||| || |||| ||||| ||| | || |||||||||||||| ||||| |||
Sbjct: 1165 ggagctgctttcaatctcttcctctacatgcttgctagtcatgtgtttggtgctttctgg 1224
Query: 769 ta 770
||
Sbjct: 1225 ta 1226
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1290 atggcaagagacaagaggagttgaagaaga 1319
|||||||||||||||||| ||||| |||||
Sbjct: 1737 atggcaagagacaagaggtgttgacgaaga 1766
Score = 36.2 bits (18), Expect = 1.2
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 415 atcgctccttcttcgcgggtttttggaagaggtg 448
||||||||||| || || |||||||| |||||||
Sbjct: 871 atcgctccttcgtctcgtgtttttgggagaggtg 904
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,276
Number of Sequences: 29161
Number of extensions: 76276
Number of successful extensions: 1852
Number of sequences better than 10.0: 57
length of query: 2121
length of database: 44,058,232
effective HSP length: 18
effective length of query: 2103
effective length of database: 43,533,334
effective search space: 91550601402
effective search space used: 91550601402
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)