BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01330.F
(2148 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-con... 3973 0.0
At4g28080.1 68417.m04027 expressed protein 56 1e-06
At5g17680.1 68418.m02072 disease resistance protein (TIR-NB... 40 0.077
At2g05752.1 68415.m00618 hypothetical protein 40 0.077
At1g29000.1 68414.m03546 heavy-metal-associated domain-cont... 40 0.077
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing protein low
similarity to SP|P46825 Kinesin light chain (KLC) {Loligo
pealeii}; contains Pfam profile PF00515: TPR Domain
Length = 5756
Score = 3973 bits (2004), Expect = 0.0
Identities = 2004/2004 (100%)
Strand = Plus / Plus
Query: 1 atggctcccaagaacaaccgtggaaagacaaaaggagataagaagaagaaggaagagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggctcccaagaacaaccgtggaaagacaaaaggagataagaagaagaaggaagagaaa 60
Query: 61 gttctcccggttatcgtggatgtcattgtaaaccttccggatgaaacggaggctattttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttctcccggttatcgtggatgtcattgtaaaccttccggatgaaacggaggctattttg 120
Query: 121 aagggcatatcaacggacaggatcatagatgttcggcggctgttatcggttaacttcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatatcaacggacaggatcatagatgttcggcggctgttatcggttaacttcgac 180
Query: 181 acctgccacgtcaccaattattcgctctcccatgagataagaggatcgcggttaaaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acctgccacgtcaccaattattcgctctcccatgagataagaggatcgcggttaaaagac 240
Query: 241 acagtggatgtgtcggcccttaaaccctgtgttctcacgttaacggaagaggattacaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acagtggatgtgtcggcccttaaaccctgtgttctcacgttaacggaagaggattacaat 300
Query: 301 gaaggaacagcagtggcgcacgttagacggctgcttgacatcgtcgcctgtaccacttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaggaacagcagtggcgcacgttagacggctgcttgacatcgtcgcctgtaccacttgc 360
Query: 361 ttcggtccgtcgccggagaaatcagactccgtgaaaagtgcgcaggttaagggaggtgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcggtccgtcgccggagaaatcagactccgtgaaaagtgcgcaggttaagggaggtgga 420
Query: 421 aagaattctaaacagtcggatacgtcgcctccgccgtctcctgcgtcgaaggatactgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagaattctaaacagtcggatacgtcgcctccgccgtctcctgcgtcgaaggatactgtg 480
Query: 481 gttgatgaagccggagagactagccactctttccctaagcttggaagtttctacgagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttgatgaagccggagagactagccactctttccctaagcttggaagtttctacgagttt 540
Query: 541 ttctctctcgctcatctcactcctcctcttcaatatattcggctcgcgactaagcgggaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttctctctcgctcatctcactcctcctcttcaatatattcggctcgcgactaagcgggaa 600
Query: 601 actgaagatatagccaaggaagatcatcttctctccattgatgtgaagctttgtaatggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actgaagatatagccaaggaagatcatcttctctccattgatgtgaagctttgtaatggg 660
Query: 661 aagctcgttcatattgaaggttgcagaaaaggattttacagcattgggaaacaaagaata 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagctcgttcatattgaaggttgcagaaaaggattttacagcattgggaaacaaagaata 720
Query: 721 atatgtcacaatcttgttgatttgcttagacaaatcagtagagccttcgataatgcttac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atatgtcacaatcttgttgatttgcttagacaaatcagtagagccttcgataatgcttac 780
Query: 781 agtgatcttctgaaagcattttcggagcgcaataagtttggaaatcttccatatgggttt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agtgatcttctgaaagcattttcggagcgcaataagtttggaaatcttccatatgggttt 840
Query: 841 agagctaacacatggctcatcccgcctactgcggcgcagtcaccagcagcgtttccgcct 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agagctaacacatggctcatcccgcctactgcggcgcagtcaccagcagcgtttccgcct 900
Query: 901 ctccctgttgaggatgagagatggggaggggatggtggtggtcaagggagagatggcagc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctccctgttgaggatgagagatggggaggggatggtggtggtcaagggagagatggcagc 960
Query: 961 tacgacttggttccatggtccaacgaattcgcctttatcgcatctatgccttgcaaaaca 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tacgacttggttccatggtccaacgaattcgcctttatcgcatctatgccttgcaaaaca 1020
Query: 1021 gcagaggagagacaagtcagagacagaaaagtgtttcttcttcacaacctctttgttgat 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gcagaggagagacaagtcagagacagaaaagtgtttcttcttcacaacctctttgttgat 1080
Query: 1081 gtcgcgactttcagagccatcaaggctgttcagaaagtaatggctgagccagtactggct 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gtcgcgactttcagagccatcaaggctgttcagaaagtaatggctgagccagtactggct 1140
Query: 1141 gaagaagactccgaagttctctattccgagacagttagagacttgactgttacggttaca 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gaagaagactccgaagttctctattccgagacagttagagacttgactgttacggttaca 1200
Query: 1201 agggatacttcaaatgcaagtagtaaagtggatacaaaaatcgatggaattcaagccact 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 agggatacttcaaatgcaagtagtaaagtggatacaaaaatcgatggaattcaagccact 1260
Query: 1261 ggtttggataaaaagaagctgatggaacggaaccttctcaagggacttacagctgatgaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggtttggataaaaagaagctgatggaacggaaccttctcaagggacttacagctgatgaa 1320
Query: 1321 aatactgctgctcatgacgttgctactttaggaactataagtcttaagtactgtggttac 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aatactgctgctcatgacgttgctactttaggaactataagtcttaagtactgtggttac 1380
Query: 1381 attgctgttgtgaaattagagaaggagagtgaggagttaagcccaccttctcaaattgtt 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 attgctgttgtgaaattagagaaggagagtgaggagttaagcccaccttctcaaattgtt 1440
Query: 1441 gacctccttgaacagcctgaaggtggtgctaatgctctaaatatcaatagtttgagattc 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gacctccttgaacagcctgaaggtggtgctaatgctctaaatatcaatagtttgagattc 1500
Query: 1501 cttctccataaatcctctcctgagcagaacaagaaaacacctcagcaacacgatgatgaa 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 cttctccataaatcctctcctgagcagaacaagaaaacacctcagcaacacgatgatgaa 1560
Query: 1561 cttacatcttcacgggaatttgtaagtaaaatgctggaagaaagcattgctaagcttgag 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 cttacatcttcacgggaatttgtaagtaaaatgctggaagaaagcattgctaagcttgag 1620
Query: 1621 ggagaggagatagacagggatagtatcatgagatgggagcttggagcttgttggatacag 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ggagaggagatagacagggatagtatcatgagatgggagcttggagcttgttggatacag 1680
Query: 1681 catttacaagaccaaaagaatacagaaaaggacaaaaaacaaaccggtgaaaagtctaag 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 catttacaagaccaaaagaatacagaaaaggacaaaaaacaaaccggtgaaaagtctaag 1740
Query: 1741 aatgaattgaaggttgaagggcttgggaaaccgcttaagtccctcaatagcagcaaaaag 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 aatgaattgaaggttgaagggcttgggaaaccgcttaagtccctcaatagcagcaaaaag 1800
Query: 1801 aaaacagatgtgagcagccctaagacgccgcagactgcattatcgtctcaagtcgatgcg 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 aaaacagatgtgagcagccctaagacgccgcagactgcattatcgtctcaagtcgatgcg 1860
Query: 1861 gtttcttcagaggctgatactgctgcatctttgcaatccgatgctgagaagaatgctcaa 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 gtttcttcagaggctgatactgctgcatctttgcaatccgatgctgagaagaatgctcaa 1920
Query: 1921 gaaaatgtgctcatcttgaagaatttgttgtctgatgcagccttcactcgcctaaaagag 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 gaaaatgtgctcatcttgaagaatttgttgtctgatgcagccttcactcgcctaaaagag 1980
Query: 1981 tcagatactggacttcatcacaag 2004
||||||||||||||||||||||||
Sbjct: 1981 tcagatactggacttcatcacaag 2004
Score = 133 bits (67), Expect = 7e-30
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 2080 agtctttgcaagaacttgtcgacttggcacagaattattatactgaagttgctattccga 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 agtctttgcaagaacttgtcgacttggcacagaattattatactgaagttgctattccga 2062
Query: 2140 aactggt 2146
|||||||
Sbjct: 2063 aactggt 2069
>At4g28080.1 68417.m04027 expressed protein
Length = 5813
Score = 56.0 bits (28), Expect = 1e-06
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 910 gaggatgagagatggggaggggatggtggtgg 941
|||||||||| |||||||||||||||||||||
Sbjct: 846 gaggatgagacatggggaggggatggtggtgg 877
>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR class),
putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 3885
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 40 aagaagaagaaggaagagaa 59
||||||||||||||||||||
Sbjct: 25 aagaagaagaaggaagagaa 6
>At2g05752.1 68415.m00618 hypothetical protein
Length = 594
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 906 tgttgaggatgagagatggg 925
||||||||||||||||||||
Sbjct: 536 tgttgaggatgagagatggg 555
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing protein
similar to farnesylated protein ATFP3 [GI:4097547];
contains Pfam profile PF00403: Heavy-metal-associated
domain
Length = 864
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 37 gataagaagaagaaggaaga 56
||||||||||||||||||||
Sbjct: 574 gataagaagaagaaggaaga 593
Score = 40.1 bits (20), Expect = 0.077
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 37 gataagaagaagaaggaaga 56
||||||||||||||||||||
Sbjct: 598 gataagaagaagaaggaaga 617
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,502
Number of Sequences: 29161
Number of extensions: 85502
Number of successful extensions: 2305
Number of sequences better than 10.0: 90
length of query: 2148
length of database: 44,058,232
effective HSP length: 18
effective length of query: 2130
effective length of database: 43,533,334
effective search space: 92726001420
effective search space used: 92726001420
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)