BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g01310.F
         (885 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01310.1  68414.m00047 allergen V5/Tpx-1-related family p...  1154   0.0  
At4g25790.1  68417.m03711 allergen V5/Tpx-1-related family p...    44   0.002
At2g19990.1  68415.m02337 pathogenesis-related protein 1 (PR...    42   0.008
At1g50060.1  68414.m05617 pathogenesis-related protein, puta...    42   0.008
At4g33730.1  68417.m04789 pathogenesis-related protein, puta...    38   0.12 
>At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protein similar to
           pathogenesis related protein-1 GB:AAC25629 GI:3290004
           from [Zea mays]; contains Pfam profile PF00188: SCP-like
           extracellular protein
          Length = 977

 Score = 1154 bits (582), Expect = 0.0
 Identities = 582/582 (100%)
 Strand = Plus / Plus

                                                                       
Query: 304 gcgacgagtactcggcttctgttgtcaccaccttcgttcaccggaaaccgattctcgttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gcgacgagtactcggcttctgttgtcaccaccttcgttcaccggaaaccgattctcgttc 271

                                                                       
Query: 364 aggttcaggtggaggagaatacgacgtcgtaacagagtcaacagagcgagcagagagttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggttcaggtggaggagaatacgacgtcgtaacagagtcaacagagcgagcagagagttt 331

                                                                       
Query: 424 ttaatcgcacataacctcgtaagagcgcgcgtgggagaaccaccgtttcaatgggacgga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttaatcgcacataacctcgtaagagcgcgcgtgggagaaccaccgtttcaatgggacgga 391

                                                                       
Query: 484 agattagcggcgtacgcgcgcacgtgggcgaatcagcgcgtgggtgattgtaggcttgtt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agattagcggcgtacgcgcgcacgtgggcgaatcagcgcgtgggtgattgtaggcttgtt 451

                                                                       
Query: 544 cactctaacgggccgtatggagaaaacatattttgggccggaaagaataactggagcccc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cactctaacgggccgtatggagaaaacatattttgggccggaaagaataactggagcccc 511

                                                                       
Query: 604 agagatattgttaatgtgtgggccgatgaggataaattctacgacgtgaaaggtaacacg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agagatattgttaatgtgtgggccgatgaggataaattctacgacgtgaaaggtaacacg 571

                                                                       
Query: 664 tgtgagccgcaacacatgtgtgggcactacacgcagatcgtgtggagagatagtaccaag 723
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtgagccgcaacacatgtgtgggcactacacgcagatcgtgtggagagatagtaccaag 631

                                                                       
Query: 724 gtcggatgcgcaagtgtggattgttcgaacggcggcgtttatgcgatttgtgtttataac 783
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtcggatgcgcaagtgtggattgttcgaacggcggcgtttatgcgatttgtgtttataac 691

                                                                       
Query: 784 ccaccgggaaattacgaaggtgaaaatccgtttggaagttatgatgatcagattggtctt 843
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccaccgggaaattacgaaggtgaaaatccgtttggaagttatgatgatcagattggtctt 751

                                                     
Query: 844 gcccgggatgatccaccggcggtgatcggaggaatggcttga 885
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gcccgggatgatccaccggcggtgatcggaggaatggcttga 793
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein similar to
           SP|Q40374 Pathogenesis-related protein PR-1 precursor
           {Medicago truncatula}; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 633

 Score = 44.1 bits (22), Expect = 0.002
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 679 atgtgtgggcactacacgcagatcgtgtgg 708
           |||||||| |||||||| ||||||||||||
Sbjct: 490 atgtgtggtcactacactcagatcgtgtgg 519
>At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1) identical to
           pathogenesis-related protein 1 {Arabidopsis thaliana}
           GI:166805; contains an extracellular proteins
           SCP/Tpx-1/Ag5/PR-1/Sc7 signature (PDOC00772)
          Length = 531

 Score = 42.1 bits (21), Expect = 0.008
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 680 tgtgtgggcactacacgcagatcgtgtgg 708
           ||||||| |||||||| ||||||||||||
Sbjct: 389 tgtgtggacactacactcagatcgtgtgg 417
>At1g50060.1 68414.m05617 pathogenesis-related protein, putative similar to
           prb-1b [Nicotiana tabacum] GI:19970; contains Pfam
           profile PF00188: SCP-like extracellular protein
          Length = 618

 Score = 42.1 bits (21), Expect = 0.008
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 538 cttgttcactctaacgggccgtatggagaaaac 570
           ||||||||||| ||||| || ||||||||||||
Sbjct: 205 cttgttcactccaacggaccatatggagaaaac 237
>At4g33730.1 68417.m04789 pathogenesis-related protein, putative similar to
           SP|P33154 Pathogenesis-related protein 1 precursor
           (PR-1) {Arabidopsis thaliana}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 519

 Score = 38.2 bits (19), Expect = 0.12
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 682 tgtgggcactacacgcagatcgtgtgg 708
           ||||| |||||||||||| ||||||||
Sbjct: 382 tgtggacactacacgcaggtcgtgtgg 408
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,949
Number of Sequences: 29161
Number of extensions: 21949
Number of successful extensions: 443
Number of sequences better than 10.0: 34
length of query: 885
length of database: 44,058,232
effective HSP length: 18
effective length of query: 867
effective length of database: 43,533,334
effective search space: 37743400578
effective search space used: 37743400578
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)