BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01310.F
(885 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family p... 1154 0.0
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family p... 44 0.002
At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR... 42 0.008
At1g50060.1 68414.m05617 pathogenesis-related protein, puta... 42 0.008
At4g33730.1 68417.m04789 pathogenesis-related protein, puta... 38 0.12
>At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protein similar to
pathogenesis related protein-1 GB:AAC25629 GI:3290004
from [Zea mays]; contains Pfam profile PF00188: SCP-like
extracellular protein
Length = 977
Score = 1154 bits (582), Expect = 0.0
Identities = 582/582 (100%)
Strand = Plus / Plus
Query: 304 gcgacgagtactcggcttctgttgtcaccaccttcgttcaccggaaaccgattctcgttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gcgacgagtactcggcttctgttgtcaccaccttcgttcaccggaaaccgattctcgttc 271
Query: 364 aggttcaggtggaggagaatacgacgtcgtaacagagtcaacagagcgagcagagagttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggttcaggtggaggagaatacgacgtcgtaacagagtcaacagagcgagcagagagttt 331
Query: 424 ttaatcgcacataacctcgtaagagcgcgcgtgggagaaccaccgtttcaatgggacgga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttaatcgcacataacctcgtaagagcgcgcgtgggagaaccaccgtttcaatgggacgga 391
Query: 484 agattagcggcgtacgcgcgcacgtgggcgaatcagcgcgtgggtgattgtaggcttgtt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agattagcggcgtacgcgcgcacgtgggcgaatcagcgcgtgggtgattgtaggcttgtt 451
Query: 544 cactctaacgggccgtatggagaaaacatattttgggccggaaagaataactggagcccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cactctaacgggccgtatggagaaaacatattttgggccggaaagaataactggagcccc 511
Query: 604 agagatattgttaatgtgtgggccgatgaggataaattctacgacgtgaaaggtaacacg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 agagatattgttaatgtgtgggccgatgaggataaattctacgacgtgaaaggtaacacg 571
Query: 664 tgtgagccgcaacacatgtgtgggcactacacgcagatcgtgtggagagatagtaccaag 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtgagccgcaacacatgtgtgggcactacacgcagatcgtgtggagagatagtaccaag 631
Query: 724 gtcggatgcgcaagtgtggattgttcgaacggcggcgtttatgcgatttgtgtttataac 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtcggatgcgcaagtgtggattgttcgaacggcggcgtttatgcgatttgtgtttataac 691
Query: 784 ccaccgggaaattacgaaggtgaaaatccgtttggaagttatgatgatcagattggtctt 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccaccgggaaattacgaaggtgaaaatccgtttggaagttatgatgatcagattggtctt 751
Query: 844 gcccgggatgatccaccggcggtgatcggaggaatggcttga 885
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gcccgggatgatccaccggcggtgatcggaggaatggcttga 793
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein similar to
SP|Q40374 Pathogenesis-related protein PR-1 precursor
{Medicago truncatula}; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 633
Score = 44.1 bits (22), Expect = 0.002
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 679 atgtgtgggcactacacgcagatcgtgtgg 708
|||||||| |||||||| ||||||||||||
Sbjct: 490 atgtgtggtcactacactcagatcgtgtgg 519
>At2g19990.1 68415.m02337 pathogenesis-related protein 1 (PR-1) identical to
pathogenesis-related protein 1 {Arabidopsis thaliana}
GI:166805; contains an extracellular proteins
SCP/Tpx-1/Ag5/PR-1/Sc7 signature (PDOC00772)
Length = 531
Score = 42.1 bits (21), Expect = 0.008
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 680 tgtgtgggcactacacgcagatcgtgtgg 708
||||||| |||||||| ||||||||||||
Sbjct: 389 tgtgtggacactacactcagatcgtgtgg 417
>At1g50060.1 68414.m05617 pathogenesis-related protein, putative similar to
prb-1b [Nicotiana tabacum] GI:19970; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 618
Score = 42.1 bits (21), Expect = 0.008
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 538 cttgttcactctaacgggccgtatggagaaaac 570
||||||||||| ||||| || ||||||||||||
Sbjct: 205 cttgttcactccaacggaccatatggagaaaac 237
>At4g33730.1 68417.m04789 pathogenesis-related protein, putative similar to
SP|P33154 Pathogenesis-related protein 1 precursor
(PR-1) {Arabidopsis thaliana}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 519
Score = 38.2 bits (19), Expect = 0.12
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 682 tgtgggcactacacgcagatcgtgtgg 708
||||| |||||||||||| ||||||||
Sbjct: 382 tgtggacactacacgcaggtcgtgtgg 408
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,949
Number of Sequences: 29161
Number of extensions: 21949
Number of successful extensions: 443
Number of sequences better than 10.0: 34
length of query: 885
length of database: 44,058,232
effective HSP length: 18
effective length of query: 867
effective length of database: 43,533,334
effective search space: 37743400578
effective search space used: 37743400578
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)