BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01150.F
(948 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01150.1 68414.m00024 expressed protein ; expression sup... 1447 0.0
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit ... 62 9e-09
At5g67580.2 68418.m08522 myb family transcription factor co... 52 9e-06
At5g67580.1 68418.m08521 myb family transcription factor co... 52 9e-06
At1g53790.1 68414.m06122 F-box family protein contains Pfam... 52 9e-06
>At1g01150.1 68414.m00024 expressed protein ; expression supported by MPSS
Length = 1038
Score = 1447 bits (730), Expect = 0.0
Identities = 741/744 (99%), Gaps = 3/744 (0%)
Strand = Plus / Plus
Query: 58 tgtgatgatggtggtgatgaggacgtcaactctgctccaaacattttcacttatgataat 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgtgatgatggtggtgatgaggacgtcaactctgctccaaacattttcacttatgataat 183
Query: 118 gtgcctcttaagaagcgccactaccttgggacaagtgacactttcagaagctttgagccg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtgcctcttaagaagcgccactaccttgggacaagtgacactttcagaagctttgagccg 243
Query: 178 ttgaacgaacacgcatgtattgtatgcgatattgcagacgatggtgtagtaccttgttct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttgaacgaacacgcatgtattgtatgcgatattgcagacgatggtgtagtaccttgttct 303
Query: 238 gggaatgaatgccctctcgctgttcacaggaagtgtgttgagcttgattgtgaagatcct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggaatgaatgccctctcgctgttcacaggaagtgtgttgagcttgattgtgaagatcct 363
Query: 298 gcaaccttttactgtccctattgttggtttaaggagcaagctactagatccacggctttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcaaccttttactgtccctattgttggtttaaggagcaagctactagatccacggctttg 423
Query: 358 agaacaaggggtgttgcagctgcgaagacccttgttcaatatggatgtagtgagctgagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agaacaaggggtgttgcagctgcgaagacccttgttcaatatggatgtagtgagctgagg 483
Query: 418 agtggagatatagtcatgacgagagaaaacagtcaactagagaatggttctgataattca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtggagatatagtcatgacgagagaaaacagtcaactagagaatggttctgataattca 543
Query: 478 ctaccaatgcaactacatgagaaccttcatcaattacaagaactggtcaagcaccttaag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctaccaatgcaactacatgagaaccttcatcaattacaagaactggtcaagcaccttaag 603
Query: 538 gctcgaaattcccagttagacgagtcaacagatcaattcattgatatggagaaatcttgc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gctcgaaattcccagttagacgagtcaacagatcaattcattgatatggagaaatcttgc 663
Query: 598 ggagaagcttatgctgttgttaatgatcagccaaaaagggtactatggacagtcaacgaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggagaagcttatgctgttgttaatgatcagccaaaaagggtactatggacagtcaacgaa 723
Query: 658 gagaagatgttgag---gggagtggagaaattttctgatacaatcaacaaaaacatgcct 714
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gagaagatgttgagggagggagtggagaaattttctgatacaatcaacaaaaacatgcct 783
Query: 715 tggaagaagattttggagatgggaaaaggtatattccacacaactcgtaattcctccgat 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tggaagaagattttggagatgggaaaaggtatattccacacaactcgtaattcctccgat 843
Query: 775 cttaaggacaaatggagaaatatg 798
||||||||||||||||||||||||
Sbjct: 844 cttaaggacaaatggagaaatatg 867
Score = 299 bits (151), Expect = 2e-80
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 798 ggtcgagattgacatcatcatcgtcgtcgcagagatcggagatcaaaatggagagggaaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ggtcgagattgacatcatcatcgtcgtcgcagagatcggagatcaaaatggagagggaaa 947
Query: 858 gaaacgcaggagtgatgaagaagatgagtccaacaggaaccatccaaagattagaatttg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 gaaacgcaggagtgatgaagaagatgagtccaacaggaaccatccaaagattagaatttg 1007
Query: 918 tgggatggtatttgtaaagccaataacttag 948
|||||||||||||||||||||||||||||||
Sbjct: 1008 tgggatggtatttgtaaagccaataacttag 1038
Score = 113 bits (57), Expect = 3e-24
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 1 atggtgagtgatctcccgcttgatgaagatgatatcgctctcctcaagagtccttat 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgagtgatctcccgcttgatgaagatgatatcgctctcctcaagagtccttat 57
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a) similar to
26S proteasome ATPase subunit GI:1395190 from [Spinacia
oleracea]
Length = 1630
Score = 61.9 bits (31), Expect = 9e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 19 cttgatgaagatgatatcgctctcctcaaga 49
|||||||||||||||||||||||||||||||
Sbjct: 194 cttgatgaagatgatatcgctctcctcaaga 224
>At5g67580.2 68418.m08522 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1720
Score = 52.0 bits (26), Expect = 9e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 772 gatcttaaggacaaatggagaaatat 797
||||||||||||||||||||||||||
Sbjct: 254 gatcttaaggacaaatggagaaatat 279
>At5g67580.1 68418.m08521 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1799
Score = 52.0 bits (26), Expect = 9e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 772 gatcttaaggacaaatggagaaatat 797
||||||||||||||||||||||||||
Sbjct: 333 gatcttaaggacaaatggagaaatat 358
>At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00646: F-box
domain; contains TIGRFAM TIGR01640 : F-box protein
interaction domain
Length = 1396
Score = 52.0 bits (26), Expect = 9e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 ccgcttgatgaagatgatatcgctctcctcaaga 49
|||||||| |||||||||||||||||| ||||||
Sbjct: 86 ccgcttgacgaagatgatatcgctctcgtcaaga 119
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,444
Number of Sequences: 29161
Number of extensions: 38444
Number of successful extensions: 1103
Number of sequences better than 10.0: 146
length of query: 948
length of database: 44,058,232
effective HSP length: 18
effective length of query: 930
effective length of database: 43,533,334
effective search space: 40486000620
effective search space used: 40486000620
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)